| SRR5560727 | caryopsis | wild_type | 1.22 | MC |
| SRR5560729 | caryopsis | wild_type | 4.32 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 3.22 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 4.66 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.59 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 2.72 | MC |
| SRR7265400 | coleoptile | 2dA | 0.36 | MC |
| SRR7265401 | coleoptile | 2dA | 0.55 | MC |
| SRR7265402 | coleoptile | 2dA | 0.58 | MC |
| SRR7265403 | coleoptile | 2dN | 0.83 | MC |
| SRR7265404 | coleoptile | 2dN | 0.71 | MC |
| SRR7265405 | coleoptile | 2dN | 1.02 | MC |
| SRR7265408 | coleoptile | 3dA | 0.46 | MC |
| SRR7265409 | coleoptile | 3dN | 0.63 | MC |
| SRR7265410 | coleoptile | 3dN | 0.61 | MC |
| SRR7265411 | coleoptile | 3dN | 0.59 | MC |
| SRR7265417 | coleoptile | 4dN | 0.50 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.29 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.40 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.09 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.11 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.71 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.49 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 3.09 | MC |
| SRR7265388 | embryo | 12hA | 2.29 | MC |
| SRR7265389 | embryo | 12hA | 2.35 | MC |
| SRR7265390 | embryo | 12hA | 3.21 | MC |
| SRR7265391 | embryo | 12hN | 1.31 | MC |
| SRR7265392 | embryo | 12hN | 1.33 | MC |
| SRR7265393 | embryo | 12hN | 0.92 | MC |
| SRR7265395 | embryo | 24hA | 1.81 | MC |
| SRR7265396 | embryo | 24hA | 0.84 | MC |
| SRR7265397 | embryo | 24hN | 1.31 | MC |
| SRR7265398 | embryo | 24hN | 1.64 | MC |
| SRR7265399 | embryo | 24hN | 0.75 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.80 | MC |
| SRR1213691 | flower | wt | 2.38 | MC |
| SRR8060835 | leaf | wild_type | 0.91 | MC |
| SRR8060836 | leaf | wild_type | 1.70 | MC |
| SRR8060837 | leaf | wild_type | 0.49 | MC |
| SRR8240824 | leaf | wild_type | 1.71 | MC |
| SRR8240825 | leaf | wild_type | 0.40 | MC |
| SRR8240819 | leaf | wild_type | 0.32 | MC |
| SRR8240820 | leaf | wild_type | 0.67 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 3.43 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.56 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.97 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.19 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 2.83 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 4.09 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 2.92 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 4.31 | MC |
| SRR1761528 | leaf | drought | 3.11 | MC |
| SRR1761529 | leaf | drought | 4.18 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.56 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.56 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.85 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.53 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.69 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.65 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.23 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.73 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.18 | MC |
| SRR6502090 | leaf | control | 0.84 | MC |
| SRR6502100 | leaf | control | 2.00 | MC |
| SRR6502101 | leaf | control | 1.30 | MC |
| SRR6502102 | leaf | control | 1.82 | MC |
| SRR5856928 | leaf | control | 0.85 | MC |
| SRR5856929 | leaf | control | 0.36 | MC |
| SRR5856930 | leaf | salt | 1.72 | MC |
| SRR5856932 | leaf | salt | 0.57 | MC |
| SRR5856933 | leaf | control | 1.02 | MC |
| SRR5856934 | leaf | control | 0.79 | MC |
| SRR5856935 | leaf | control | 0.76 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 4.91 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 2.10 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 2.22 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 1.88 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 4.42 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 1.76 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 1.22 | MC |
| SRR6168974 | leaf | none (control) | 2.71 | MC |
| SRR6168975 | leaf | none (control) | 0.59 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 6.58 | MC |
| SRR6168981 | leaf | none (control) | 0.26 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.49 | MC |
| SRR8582888 | panicle | AM | 1.15 | MC |
| SRR8582889 | panicle | AM | 0.85 | MC |
| SRR8582890 | panicle | AM | 0.56 | MC |
| SRR8582893 | panicle | PM | 0.67 | MC |
| SRR5110429 | panicle | Dawn | 2.13 | MC |
| SRR5110430 | panicle | Dawn | 2.65 | MC |
| SRR5110431 | panicle | Dawn | 4.24 | MC |
| SRR5110432 | panicle | Dawn | 1.33 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 2.67 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.15 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.67 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 2.89 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.42 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.19 | MC |
| SRR5110439 | panicle | Dawn + 7h | 2.01 | MC |
| SRR5110440 | panicle | Dawn + 7h | 2.94 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.45 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.89 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.54 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.64 | MC |
| SRR5110445 | panicle | Dusk | 1.21 | MC |
| SRR5110446 | panicle | Dusk | 1.28 | MC |
| SRR5110447 | panicle | Dusk | 0.79 | MC |
| SRR5110448 | panicle | Dusk | 0.69 | MC |
| SRR5110449 | panicle | Dawn + 14h | 3.58 | MC |
| SRR5110450 | panicle | Dawn + 14h | 2.27 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.94 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.38 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.01 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.82 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.65 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.54 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.52 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.49 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.51 | MC |
| SRR1633182 | panicle | WT | 3.14 | MC |
| SRR5126147 | root | "mock,1_day" | 0.64 | MC |
| SRR5126148 | root | "mock,1_day" | 1.16 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.33 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.57 | MC |
| SRR5126153 | root | "mock,7_days" | 0.39 | MC |
| SRR5126155 | root | "mock,7_days" | 1.72 | MC |
| SRR5126157 | root | "mock,7_days" | 0.98 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.23 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.64 | MC |
| SRR5126165 | root | "mock,14_days" | 0.40 | MC |
| SRR5126167 | root | "mock,14_days" | 0.64 | MC |
| SRR5126169 | root | "mock,14_days" | 0.55 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.28 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.28 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.49 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.72 | MC |
| SRR6502092 | root | 100 mM NaCl | 2.70 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.40 | MC |
| SRR6502094 | root | control | 0.91 | MC |
| SRR6502095 | root | control | 1.05 | MC |
| SRR6502096 | root | control | 0.52 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.94 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.92 | MC |
| SRR6502107 | root | control | 0.30 | MC |
| SRR6502108 | root | control | 0.41 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.35 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.53 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.33 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.34 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.61 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.27 | MC |
| SRR1740428 | root_meristematic_zone | wt | 2.18 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.54 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.50 | MC |
| SRR6441554 | seedling | wild_type | 0.42 | MC |
| SRR6441555 | seedling | wild_type | 0.31 | MC |
| SRR2154086 | seedling | wt | 2.68 | MC |
| SRR2154082 | seedling | wt | 2.31 | MC |
| SRR2154083 | seedling | wt | 2.53 | MC |
| SRR2154084 | seedling | wt | 0.55 | MC |
| SRR2154085 | seedling | wt | 1.44 | MC |
| SRR2154087 | seedling | wt | 2.85 | MC |
| SRR3098741 | seedling | wt | 0.48 | MC |
| SRR3098742 | seedling | wt | 1.55 | MC |
| SRR3098743 | seedling | wt | 0.92 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.62 | MC |
| SRR358792 | seedling | wt | 0.78 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.76 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.19 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.33 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.01 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.55 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.35 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.79 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.87 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.86 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.74 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.44 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.56 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.47 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.07 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.60 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.41 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.75 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.67 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.13 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.27 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.44 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.98 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.86 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.16 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 3.30 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.61 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 2.28 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.29 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.08 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.24 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.14 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.36 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.97 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.83 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.80 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.77 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 2.15 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.97 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.96 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.22 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.73 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 2.51 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 2.21 | MC |