| SRR4457252 | 2nd_leaf | DAH12 | 0.30 | MC |
| SRR358795 | callus | wt | 1.75 | MC |
| SRR358796 | callus | wt | 1.38 | MC |
| SRR358797 | callus | wt | 1.54 | MC |
| SRR358798 | callus | wt | 1.84 | MC |
| SRR5560727 | caryopsis | wild_type | 0.27 | MC |
| SRR5560728 | caryopsis | wild_type | 0.55 | MC |
| SRR5560729 | caryopsis | wild_type | 0.98 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.06 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.48 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.95 | MC |
| SRR7265400 | coleoptile | 2dA | 0.34 | MC |
| SRR7265401 | coleoptile | 2dA | 0.39 | MC |
| SRR7265402 | coleoptile | 2dA | 0.64 | MC |
| SRR7265403 | coleoptile | 2dN | 0.87 | MC |
| SRR7265404 | coleoptile | 2dN | 0.82 | MC |
| SRR7265405 | coleoptile | 2dN | 0.63 | MC |
| SRR7265406 | coleoptile | 3dA | 0.89 | MC |
| SRR7265407 | coleoptile | 3dA | 1.10 | MC |
| SRR7265408 | coleoptile | 3dA | 0.40 | MC |
| SRR7265409 | coleoptile | 3dN | 2.05 | MC |
| SRR7265410 | coleoptile | 3dN | 1.38 | MC |
| SRR7265411 | coleoptile | 3dN | 2.29 | MC |
| SRR7265412 | coleoptile | 4dA | 0.46 | MC |
| SRR7265413 | coleoptile | 4dA | 0.75 | MC |
| SRR7265414 | coleoptile | 4dA | 0.55 | MC |
| SRR7265415 | coleoptile | 4dN | 2.13 | MC |
| SRR7265416 | coleoptile | 4dN | 2.15 | MC |
| SRR7265417 | coleoptile | 4dN | 1.77 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 2.07 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.22 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.87 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.48 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.95 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.89 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.96 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.84 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.88 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.54 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.53 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.63 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.65 | MC |
| SRR7265377 | embryo | 1hA | 0.36 | MC |
| SRR7265378 | embryo | 1hA | 0.31 | MC |
| SRR7265379 | embryo | 1hN | 0.36 | MC |
| SRR7265380 | embryo | 1hN | 0.73 | MC |
| SRR7265381 | embryo | 1hN | 0.34 | MC |
| SRR7265387 | embryo | 3hN | 0.24 | MC |
| SRR7265388 | embryo | 12hA | 0.65 | MC |
| SRR7265389 | embryo | 12hA | 0.70 | MC |
| SRR7265390 | embryo | 12hA | 0.94 | MC |
| SRR7265391 | embryo | 12hN | 0.58 | MC |
| SRR7265392 | embryo | 12hN | 0.42 | MC |
| SRR7265393 | embryo | 12hN | 0.54 | MC |
| SRR7265395 | embryo | 24hA | 1.13 | MC |
| SRR7265397 | embryo | 24hN | 0.68 | MC |
| SRR7265398 | embryo | 24hN | 0.49 | MC |
| SRR7265399 | embryo | 24hN | 0.51 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.44 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.22 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.28 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.34 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.29 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.63 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.64 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.53 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.58 | MC |
| SRR504365 | leaf | wt | 0.24 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.38 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.20 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.27 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.35 | MC |
| SRR1213692 | leaf | wt | 0.42 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.46 | MC |
| SRR6502100 | leaf | control | 0.98 | MC |
| SRR5856927 | leaf | control | 1.07 | MC |
| SRR5856928 | leaf | control | 1.89 | MC |
| SRR5856929 | leaf | control | 0.91 | MC |
| SRR5856930 | leaf | salt | 0.24 | MC |
| SRR5856931 | leaf | salt | 0.37 | MC |
| SRR5856932 | leaf | salt | 0.36 | MC |
| SRR5856933 | leaf | control | 1.36 | MC |
| SRR5856934 | leaf | control | 0.87 | MC |
| SRR5856935 | leaf | control | 0.81 | MC |
| SRR5856936 | leaf | salt | 0.47 | MC |
| SRR5856937 | leaf | salt | 0.28 | MC |
| SRR5856938 | leaf | salt | 0.32 | MC |
| SRR6168973 | leaf | none (control) | 1.52 | MC |
| SRR6168974 | leaf | none (control) | 0.58 | MC |
| SRR6168975 | leaf | none (control) | 1.28 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.54 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.62 | MC |
| SRR8582891 | panicle | PM | 0.43 | MC |
| SRR8582893 | panicle | PM | 0.24 | MC |
| SRR5110429 | panicle | Dawn | 0.37 | MC |
| SRR5110431 | panicle | Dawn | 0.35 | MC |
| SRR5110432 | panicle | Dawn | 0.51 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.43 | MC |
| SRR5110446 | panicle | Dusk | 0.45 | MC |
| SRR5110447 | panicle | Dusk | 0.46 | MC |
| SRR5110448 | panicle | Dusk | 0.48 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.77 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.55 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.38 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.46 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.66 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.45 | MC |
| SRR1633182 | panicle | WT | 0.32 | MC |
| SRR1633185 | panicle | WT | 0.69 | MC |
| SRR5126147 | root | "mock,1_day" | 1.05 | MC |
| SRR5126148 | root | "mock,1_day" | 0.35 | MC |
| SRR5126149 | root | "mock,1_day" | 1.76 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.87 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.35 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.56 | MC |
| SRR5126153 | root | "mock,7_days" | 0.36 | MC |
| SRR5126155 | root | "mock,7_days" | 0.77 | MC |
| SRR5126157 | root | "mock,7_days" | 2.24 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 3.01 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 3.88 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 3.07 | MC |
| SRR5126165 | root | "mock,14_days" | 0.42 | MC |
| SRR5126167 | root | "mock,14_days" | 1.25 | MC |
| SRR5126169 | root | "mock,14_days" | 1.40 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.62 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.87 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 3.06 | MC |
| SRR4947478 | root | control | 0.62 | MC |
| SRR4947482 | root | Al | 1.24 | MC |
| SRR4947487 | root | control | 0.54 | MC |
| SRR4947490 | root | Al | 0.47 | MC |
| SRR4947491 | root | Al | 0.50 | MC |
| SRR4947498 | root | Al | 0.72 | MC |
| SRR4947499 | root | Al | 0.51 | MC |
| SRR4947502 | root | control | 0.72 | MC |
| SRR4947503 | root | control | 0.57 | MC |
| SRR4947506 | root | Al | 0.58 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.83 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.50 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.42 | MC |
| SRR6502106 | root | control | 0.82 | MC |
| SRR6502107 | root | control | 0.41 | MC |
| SRR6502108 | root | control | 0.53 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.36 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.26 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.25 | MC |
| SRR2154086 | seedling | wt | 0.41 | MC |
| SRR2154082 | seedling | wt | 0.30 | MC |
| SRR2154083 | seedling | wt | 0.32 | MC |
| SRR2154084 | seedling | wt | 0.70 | MC |
| SRR3098741 | seedling | wt | 1.38 | MC |
| SRR3098742 | seedling | wt | 2.13 | MC |
| SRR3098743 | seedling | wt | 2.05 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.05 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.56 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 4.14 | MC |
| SRR1944583 | seedling | no_treatment | 0.55 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.35 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.00 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.18 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 3.79 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.24 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.52 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.35 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.70 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.39 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.46 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.61 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.31 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.37 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.88 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.55 | MC |