| SRR4457250 | 2nd_leaf | DAH4 | 0.70 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.56 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.80 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.48 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.61 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.47 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.69 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.25 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.66 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.88 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.98 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.26 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.00 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.53 | MC |
| SRR5560727 | caryopsis | wild_type | 0.77 | MC |
| SRR5560728 | caryopsis | wild_type | 0.55 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.68 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.58 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.73 | MC |
| SRR7265386 | embryo | 3hN | 0.27 | MC |
| SRR7265387 | embryo | 3hN | 0.24 | MC |
| SRR2338867 | endosprem | control | 0.44 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.28 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.39 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.53 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.34 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.26 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.35 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.34 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.33 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.67 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.47 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.91 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.40 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.51 | MC |
| SRR8060835 | leaf | wild_type | 0.22 | MC |
| SRR8240825 | leaf | wild_type | 0.33 | MC |
| SRR8240819 | leaf | wild_type | 0.29 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.47 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.17 | MC |
| SRR504365 | leaf | wt | 0.56 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.32 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.42 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.33 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.69 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.38 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.86 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.31 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.79 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.04 | MC |
| SRR6168973 | leaf | none (control) | 1.38 | MC |
| SRR6168974 | leaf | none (control) | 1.48 | MC |
| SRR6168975 | leaf | none (control) | 2.65 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.62 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.56 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.33 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.22 | MC |
| SRR8582890 | panicle | AM | 0.25 | MC |
| SRR8582893 | panicle | PM | 0.40 | MC |
| SRR1633182 | panicle | WT | 0.59 | MC |
| SRR5126147 | root | "mock,1_day" | 0.45 | MC |
| SRR5126149 | root | "mock,1_day" | 0.64 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.34 | MC |
| SRR5126153 | root | "mock,7_days" | 0.63 | MC |
| SRR5126155 | root | "mock,7_days" | 1.44 | MC |
| SRR5126157 | root | "mock,7_days" | 1.94 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.57 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.82 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.51 | MC |
| SRR5126165 | root | "mock,14_days" | 1.06 | MC |
| SRR5126167 | root | "mock,14_days" | 0.98 | MC |
| SRR5126169 | root | "mock,14_days" | 1.30 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.78 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.79 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.21 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.37 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.34 | MC |
| SRR1213694 | root | wt | 0.60 | MC |
| SRR1213695 | root | wt | 0.13 | MC |
| SRR4947480 | root | control | 0.66 | MC |
| SRR4947488 | root | control | 0.85 | MC |
| SRR4947504 | root | control | 1.02 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.42 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.59 | MC |
| SRR6502094 | root | control | 0.65 | MC |
| SRR6502095 | root | control | 0.45 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.51 | MC |
| SRR6502106 | root | control | 0.36 | MC |
| SRR6502107 | root | control | 0.50 | MC |
| SRR6441554 | seedling | wild_type | 0.76 | MC |
| SRR6441555 | seedling | wild_type | 0.92 | MC |
| SRR2154085 | seedling | wt | 0.69 | MC |
| SRR2154087 | seedling | wt | 0.50 | MC |
| SRR3098741 | seedling | wt | 0.25 | MC |
| SRR3098742 | seedling | wt | 0.18 | MC |
| SRR3098743 | seedling | wt | 0.33 | MC |
| SRR1944583 | seedling | no_treatment | 0.36 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.44 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.53 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.48 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 8.26 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 11.02 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.12 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.69 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 2.86 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.07 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.51 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.25 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.59 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.13 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.44 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.64 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.75 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.02 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.70 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.50 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.33 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.39 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.32 | MC |