| SRR358795 | callus | wt | 8.49 | MC |
| SRR358796 | callus | wt | 7.91 | MC |
| SRR358797 | callus | wt | 6.27 | MC |
| SRR358798 | callus | wt | 6.29 | MC |
| SRR5560728 | caryopsis | wild_type | 2.81 | MC |
| SRR5560729 | caryopsis | wild_type | 1.17 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.43 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.58 | MC |
| SRR7265401 | coleoptile | 2dA | 0.28 | MC |
| SRR7265403 | coleoptile | 2dN | 0.62 | MC |
| SRR7265404 | coleoptile | 2dN | 0.41 | MC |
| SRR7265405 | coleoptile | 2dN | 0.42 | MC |
| SRR7265406 | coleoptile | 3dA | 0.49 | MC |
| SRR7265412 | coleoptile | 4dA | 0.44 | MC |
| SRR7265413 | coleoptile | 4dA | 0.80 | MC |
| SRR7265414 | coleoptile | 4dA | 0.61 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.48 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.70 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.39 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.49 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.41 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.45 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.33 | MC |
| SRR7265381 | embryo | 1hN | 0.28 | MC |
| SRR7265386 | embryo | 3hN | 0.24 | MC |
| SRR7265389 | embryo | 12hA | 1.04 | MC |
| SRR7265390 | embryo | 12hA | 0.50 | MC |
| SRR7265391 | embryo | 12hN | 0.64 | MC |
| SRR7265392 | embryo | 12hN | 0.77 | MC |
| SRR7265393 | embryo | 12hN | 0.75 | MC |
| SRR7265396 | embryo | 24hA | 0.55 | MC |
| SRR7265397 | embryo | 24hN | 0.73 | MC |
| SRR7265399 | embryo | 24hN | 0.42 | MC |
| SRR2338867 | endosprem | control | 0.62 | MC |
| SRR2338868 | endosprem | high_temperature | 1.18 | MC |
| SRR2338869 | endosprem | high_temperature | 2.12 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.22 | MC |
| SRR5856933 | leaf | control | 0.22 | MC |
| SRR6168981 | leaf | none (control) | 0.57 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.18 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.38 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.21 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.95 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 2.63 | MC |
| SRR5126147 | root | "mock,1_day" | 0.62 | MC |
| SRR5126148 | root | "mock,1_day" | 0.40 | MC |
| SRR5126149 | root | "mock,1_day" | 0.72 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.55 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.63 | MC |
| SRR5126157 | root | "mock,7_days" | 0.48 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.65 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.99 | MC |
| SRR5126165 | root | "mock,14_days" | 0.61 | MC |
| SRR5126167 | root | "mock,14_days" | 0.62 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.40 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.66 | MC |
| SRR4947505 | root | control | 0.60 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.74 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.39 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.29 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.59 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.45 | MC |
| SRR1740428 | root_meristematic_zone | wt | 0.87 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.56 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.50 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.41 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.55 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.61 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.09 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.54 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.81 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.29 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.45 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.57 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.76 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.42 | MC |