| SRR3745126 | anther | wt | 0.67 | MC |
| SRR358795 | callus | wt | 2.39 | MC |
| SRR358796 | callus | wt | 1.80 | MC |
| SRR358797 | callus | wt | 4.65 | MC |
| SRR358798 | callus | wt | 3.73 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.09 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.83 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.93 | MC |
| SRR4947495 | root | control | 1.86 | MC |
| SRR7265403 | coleoptile | 2dN | 1.54 | MC |
| SRR7265404 | coleoptile | 2dN | 1.51 | MC |
| SRR7265405 | coleoptile | 2dN | 2.23 | MC |
| SRR7265406 | coleoptile | 3dA | 3.05 | MC |
| SRR7265407 | coleoptile | 3dA | 2.04 | MC |
| SRR7265408 | coleoptile | 3dA | 1.79 | MC |
| SRR7265409 | coleoptile | 3dN | 0.43 | MC |
| SRR7265410 | coleoptile | 3dN | 0.35 | MC |
| SRR7265417 | coleoptile | 4dN | 0.89 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.78 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.18 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.60 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.41 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.57 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.63 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.75 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.53 | MC |
| SRR7265391 | embryo | 12hN | 1.16 | MC |
| SRR7265392 | embryo | 12hN | 0.48 | MC |
| SRR7265393 | embryo | 12hN | 1.69 | MC |
| SRR7265397 | embryo | 24hN | 3.12 | MC |
| SRR7265398 | embryo | 24hN | 2.47 | MC |
| SRR7265399 | embryo | 24hN | 2.44 | MC |
| SRR2338868 | endosprem | high_temperature | 0.74 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.69 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.20 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.37 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.43 | MC |
| SRR504365 | leaf | wt | 1.43 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.36 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.48 | MC |
| SRR8611900 | leaf | Non-inoculated | 2.59 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.39 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.38 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.85 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.92 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.79 | MC |
| SRR5856933 | leaf | control | 2.19 | MC |
| SRR5856934 | leaf | control | 1.39 | MC |
| SRR5856935 | leaf | control | 2.27 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 1.14 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 2.04 | MC |
| SRR6168980 | leaf | none (control) | 0.17 | MC |
| SRR8582889 | panicle | AM | 0.76 | MC |
| SRR8582893 | panicle | PM | 0.50 | MC |
| SRR5110429 | panicle | Dawn | 0.48 | MC |
| SRR5110430 | panicle | Dawn | 1.19 | MC |
| SRR5110431 | panicle | Dawn | 1.08 | MC |
| SRR4947496 | root | control | 1.30 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.11 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.91 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.88 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.32 | MC |
| SRR5110446 | panicle | Dusk | 0.97 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.06 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.52 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.03 | MC |
| SRR5110460 | panicle | Dawn + 21h | 2.02 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.39 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.80 | MC |
| SRR1633182 | panicle | WT | 3.35 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.38 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.84 | MC |
| SRR5126155 | root | "mock,7_days" | 1.85 | MC |
| SRR5126157 | root | "mock,7_days" | 2.22 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.21 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.79 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.87 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.70 | MC |
| SRR1213695 | root | wt | 2.24 | MC |
| SRR4947478 | root | control | 2.00 | MC |
| SRR4947479 | root | control | 1.78 | MC |
| SRR4947480 | root | control | 0.51 | MC |
| SRR4947481 | root | control | 2.72 | MC |
| SRR4947482 | root | Al | 0.58 | MC |
| SRR4947484 | root | Al | 2.96 | MC |
| SRR4947487 | root | control | 1.93 | MC |
| SRR4947488 | root | control | 0.59 | MC |
| SRR4947490 | root | Al | 1.61 | MC |
| SRR4947492 | root | Al | 1.18 | MC |
| SRR4947493 | root | Al | 1.06 | MC |
| SRR4947494 | root | control | 4.17 | MC |
| SRR4947497 | root | control | 3.17 | MC |
| SRR4947499 | root | Al | 0.46 | MC |
| SRR4947500 | root | Al | 0.66 | MC |
| SRR4947501 | root | Al | 2.27 | MC |
| SRR4947502 | root | control | 3.42 | MC |
| SRR4947503 | root | control | 1.15 | MC |
| SRR4947504 | root | control | 1.27 | MC |
| SRR4947505 | root | control | 1.17 | MC |
| SRR4947506 | root | Al | 0.62 | MC |
| SRR4947507 | root | Al | 0.67 | MC |
| SRR4947508 | root | Al | 1.52 | MC |
| SRR4947509 | root | Al | 1.23 | MC |
| SRR6502091 | root | 100 mM NaCl | 4.41 | MC |
| SRR6502092 | root | 100 mM NaCl | 2.01 | MC |
| SRR6502093 | root | 100 mM NaCl | 3.79 | MC |
| SRR6502103 | root | 100 mM NaCl | 3.29 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.70 | MC |
| SRR2154082 | seedling | wt | 0.43 | MC |
| SRR3098741 | seedling | wt | 0.75 | MC |
| SRR3098743 | seedling | wt | 1.25 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.97 | MC |
| SRR1944583 | seedling | no_treatment | 1.26 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.33 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.81 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.94 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.03 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.43 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.86 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.93 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 2.42 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.84 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 2.51 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.47 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.66 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.60 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.76 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.44 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.35 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.42 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 0.55 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.67 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 2.87 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 4.38 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 2.05 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.77 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.62 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 2.45 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 3.22 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.72 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.46 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.87 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.22 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.45 | MC |