| SRR4457263 | 2nd_leaf | DAH36 | 4.93 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 2.55 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 2.00 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 3.84 | MC |
| SRR3745125 | anther | wt | 5.49 | MC |
| SRR3745126 | anther | wt | 4.20 | MC |
| SRR5560728 | caryopsis | wild_type | 5.08 | MC |
| SRR5560729 | caryopsis | wild_type | 4.51 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 2.51 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.21 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.17 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 2.08 | MC |
| SRR7265400 | coleoptile | 2dA | 0.43 | MC |
| SRR7265401 | coleoptile | 2dA | 0.42 | MC |
| SRR7265402 | coleoptile | 2dA | 0.42 | MC |
| SRR7265406 | coleoptile | 3dA | 0.35 | MC |
| SRR7265407 | coleoptile | 3dA | 0.27 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.47 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 0.51 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.43 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.58 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.38 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.39 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.42 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.55 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.40 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 4.23 | MC |
| SRR2338868 | endosprem | high_temperature | 0.44 | MC |
| SRR976168 | flag_leaf | wild_type | 0.63 | MC |
| SRR4457240 | flag_leaf | DAH28 | 3.10 | MC |
| SRR4457241 | flag_leaf | DAH28 | 3.40 | MC |
| SRR4457243 | flag_leaf | DAH36 | 4.04 | MC |
| SRR4457246 | flag_leaf | DAH44 | 2.84 | MC |
| SRR4457247 | flag_leaf | DAH44 | 2.03 | MC |
| SRR4457248 | flag_leaf | DAH44 | 2.00 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.01 | MC |
| SRR1213691 | flower | wt | 3.06 | MC |
| SRR8060835 | leaf | wild_type | 0.88 | MC |
| SRR8060836 | leaf | wild_type | 0.90 | MC |
| SRR8060837 | leaf | wild_type | 0.81 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 2.48 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 4.12 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 3.51 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 2.87 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 5.36 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 2.87 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 5.36 | MC |
| SRR1761528 | leaf | drought | 2.87 | MC |
| SRR1761529 | leaf | drought | 5.36 | MC |
| SRR6502089 | leaf | control | 3.61 | MC |
| SRR6502090 | leaf | control | 3.64 | MC |
| SRR5856929 | leaf | control | 0.16 | MC |
| SRR5856933 | leaf | control | 1.24 | MC |
| SRR5856934 | leaf | control | 0.88 | MC |
| SRR5856935 | leaf | control | 0.95 | MC |
| SRR5856936 | leaf | salt | 0.74 | MC |
| SRR5856937 | leaf | salt | 0.97 | MC |
| SRR5856938 | leaf | salt | 0.75 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.23 | MC |
| SRR6168979 | leaf | none (control) | 0.63 | MC |
| SRR4947496 | root | control | 4.05 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.26 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.30 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.45 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.62 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.71 | MC |
| SRR5126148 | root | "mock,1_day" | 2.13 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 4.43 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.95 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.28 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.85 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.00 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 3.80 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.16 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.73 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.69 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 2.76 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.81 | MC |
| SRR1213694 | root | wt | 2.05 | MC |
| SRR4947480 | root | control | 2.63 | MC |
| SRR4947481 | root | control | 4.52 | MC |
| SRR4947484 | root | Al | 4.16 | MC |
| SRR4947488 | root | control | 3.01 | MC |
| SRR4947489 | root | control | 3.68 | MC |
| SRR4947498 | root | Al | 0.54 | MC |
| SRR4947504 | root | control | 4.04 | MC |
| SRR4947505 | root | control | 4.99 | MC |
| SRR6502094 | root | control | 3.68 | MC |
| SRR6502095 | root | control | 1.99 | MC |
| SRR6502096 | root | control | 2.13 | MC |
| SRR6502106 | root | control | 3.16 | MC |
| SRR6502107 | root | control | 2.44 | MC |
| SRR6502108 | root | control | 2.32 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.38 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.03 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.30 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.44 | MC |
| SRR6441555 | seedling | wild_type | 3.09 | MC |
| SRR2154082 | seedling | wt | 0.63 | MC |
| SRR2857719 | seedling | drought_stress_0h | 4.29 | MC |
| SRR358791 | seedling | wt | 5.18 | MC |
| SRR358792 | seedling | wt | 7.24 | MC |
| SRR358793 | seedling | wt | 3.70 | MC |
| SRR358794 | seedling | wt | 5.39 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.32 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.99 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.19 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.45 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.38 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.79 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.21 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.88 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.30 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 2.98 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.93 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 2.52 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 3.00 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 3.90 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 4.14 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 3.46 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 3.39 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.27 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.69 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.88 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.68 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 0.86 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 0.78 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.34 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.73 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.41 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.26 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.02 | MC |