| SRR4457249 | 2nd_leaf | DAH4 | 2.39 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 2.70 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 2.47 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 2.04 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.64 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 2.14 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.92 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 2.54 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.72 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.27 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.53 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.99 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 2.47 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 3.82 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 2.26 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 3.83 | MC |
| SRR5560727 | caryopsis | wild_type | 4.69 | MC |
| SRR5560728 | caryopsis | wild_type | 5.27 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 3.29 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 3.47 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.48 | MC |
| SRR4947495 | root | control | 0.49 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 2.69 | MC |
| SRR7265402 | coleoptile | 2dA | 2.01 | MC |
| SRR7265404 | coleoptile | 2dN | 3.69 | MC |
| SRR7265405 | coleoptile | 2dN | 3.61 | MC |
| SRR7265406 | coleoptile | 3dA | 1.44 | MC |
| SRR7265407 | coleoptile | 3dA | 0.68 | MC |
| SRR7265408 | coleoptile | 3dA | 1.71 | MC |
| SRR7265409 | coleoptile | 3dN | 1.56 | MC |
| SRR7265413 | coleoptile | 4dA | 2.57 | MC |
| SRR7265414 | coleoptile | 4dA | 2.00 | MC |
| SRR7265415 | coleoptile | 4dN | 4.01 | MC |
| SRR7265416 | coleoptile | 4dN | 3.44 | MC |
| SRR7265417 | coleoptile | 4dN | 2.57 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.53 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.94 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.24 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 3.64 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.09 | MC |
| SRR7265383 | embryo | 3hA | 4.18 | MC |
| SRR7265389 | embryo | 12hA | 3.26 | MC |
| SRR7265391 | embryo | 12hN | 2.35 | MC |
| SRR7265394 | embryo | 24hA | 2.39 | MC |
| SRR7265395 | embryo | 24hA | 3.96 | MC |
| SRR7265396 | embryo | 24hA | 4.35 | MC |
| SRR7265399 | embryo | 24hN | 3.04 | MC |
| SRR2338868 | endosprem | high_temperature | 1.41 | MC |
| SRR2338869 | endosprem | high_temperature | 1.85 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.07 | MC |
| SRR4457232 | flag_leaf | DAH4 | 2.22 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.74 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.17 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.67 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.95 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.67 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.65 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.22 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.89 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.90 | MC |
| SRR4457246 | flag_leaf | DAH44 | 2.26 | MC |
| SRR4457247 | flag_leaf | DAH44 | 3.12 | MC |
| SRR1213691 | flower | wt | 3.87 | MC |
| SRR8240824 | leaf | wild_type | 2.56 | MC |
| SRR8240826 | leaf | wild_type | 1.05 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 3.95 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.78 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 3.03 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 3.04 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.09 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.73 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.58 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.73 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.72 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.55 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.27 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.89 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.68 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.32 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.49 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.19 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.19 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 3.60 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 3.52 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.56 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.05 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.40 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.42 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.87 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.26 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.27 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.41 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 5.01 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.08 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.46 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.20 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 5.03 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 2.62 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.72 | MC |
| SRR504365 | leaf | wt | 2.66 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.67 | MC |
| SRR6417968 | leaf | H2O_control | 2.13 | MC |
| SRR6417969 | leaf | H2O_control | 2.13 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 3.96 | MC |
| SRR8611900 | leaf | Non-inoculated | 3.46 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.08 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.11 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 2.76 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 3.12 | MC |
| SRR1213692 | leaf | wt | 4.20 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 3.45 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.91 | MC |
| SRR6502090 | leaf | control | 0.62 | MC |
| SRR6168973 | leaf | none (control) | 4.10 | MC |
| SRR6168975 | leaf | none (control) | 3.04 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.41 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 6.22 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.17 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.71 | MC |
| SRR8582889 | panicle | AM | 0.41 | MC |
| SRR8582891 | panicle | PM | 2.59 | MC |
| SRR8582893 | panicle | PM | 1.93 | MC |
| SRR4947496 | root | control | 3.61 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.40 | MC |
| SRR5110447 | panicle | Dusk | 0.58 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.83 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.13 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.87 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.82 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 2.93 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 4.57 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 5.71 | MC |
| SRR5126147 | root | "mock,1_day" | 3.64 | MC |
| SRR5126148 | root | "mock,1_day" | 2.99 | MC |
| SRR5126149 | root | "mock,1_day" | 3.43 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 3.80 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 3.05 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 3.18 | MC |
| SRR5126157 | root | "mock,7_days" | 3.21 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 5.09 | MC |
| SRR5126167 | root | "mock,14_days" | 2.43 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.93 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 4.75 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.35 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 2.22 | MC |
| SRR1213694 | root | wt | 0.82 | MC |
| SRR4947479 | root | control | 1.43 | MC |
| SRR4947480 | root | control | 3.50 | MC |
| SRR4947481 | root | control | 4.54 | MC |
| SRR4947482 | root | Al | 0.55 | MC |
| SRR4947485 | root | Al | 1.28 | MC |
| SRR4947487 | root | control | 0.55 | MC |
| SRR4947489 | root | control | 2.49 | MC |
| SRR4947490 | root | Al | 1.00 | MC |
| SRR4947493 | root | Al | 4.68 | MC |
| SRR4947497 | root | control | 3.72 | MC |
| SRR4947498 | root | Al | 1.41 | MC |
| SRR4947500 | root | Al | 5.52 | MC |
| SRR4947501 | root | Al | 6.10 | MC |
| SRR4947502 | root | control | 1.18 | MC |
| SRR4947506 | root | Al | 1.27 | MC |
| SRR4947507 | root | Al | 1.64 | MC |
| SRR6502091 | root | 100 mM NaCl | 4.47 | MC |
| SRR6502094 | root | control | 4.87 | MC |
| SRR6502104 | root | 100 mM NaCl | 2.11 | MC |
| SRR6502108 | root | control | 1.74 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.52 | MC |
| SRR6441554 | seedling | wild_type | 2.86 | MC |
| SRR6441555 | seedling | wild_type | 2.07 | MC |
| SRR2154082 | seedling | wt | 0.46 | MC |
| SRR3098741 | seedling | wt | 1.78 | MC |
| SRR3098742 | seedling | wt | 1.37 | MC |
| SRR3098743 | seedling | wt | 0.78 | MC |
| SRR2857719 | seedling | drought_stress_0h | 3.56 | MC |
| SRR2857720 | seedling | drought_stress_1h | 3.34 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.69 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.84 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.40 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.55 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.04 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.05 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.07 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.78 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.50 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.33 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.40 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.04 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.83 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.71 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.58 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.73 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.01 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.53 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.36 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.97 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.39 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 2.90 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 4.46 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 3.49 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 3.71 | MC |