| SRR5560727 | caryopsis | wild_type | 2.19 | MC |
| SRR5560728 | caryopsis | wild_type | 0.48 | MC |
| SRR5560729 | caryopsis | wild_type | 1.79 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.60 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.31 | MC |
| SRR7265401 | coleoptile | 2dA | 0.27 | MC |
| SRR7265404 | coleoptile | 2dN | 0.30 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.00 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.40 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.41 | MC |
| SRR7265376 | embryo | 1hA | 1.40 | MC |
| SRR7265377 | embryo | 1hA | 1.90 | MC |
| SRR7265378 | embryo | 1hA | 1.61 | MC |
| SRR7265379 | embryo | 1hN | 0.31 | MC |
| SRR7265380 | embryo | 1hN | 0.72 | MC |
| SRR7265381 | embryo | 1hN | 0.59 | MC |
| SRR7265385 | embryo | 3hN | 3.36 | MC |
| SRR7265386 | embryo | 3hN | 2.34 | MC |
| SRR7265388 | embryo | 12hA | 1.16 | MC |
| SRR7265389 | embryo | 12hA | 1.73 | MC |
| SRR7265390 | embryo | 12hA | 0.93 | MC |
| SRR7265391 | embryo | 12hN | 3.41 | MC |
| SRR7265392 | embryo | 12hN | 2.63 | MC |
| SRR7265393 | embryo | 12hN | 2.53 | MC |
| SRR7265395 | embryo | 24hA | 0.75 | MC |
| SRR7265398 | embryo | 24hN | 1.73 | MC |
| SRR7265399 | embryo | 24hN | 0.70 | MC |
| SRR2338866 | endosprem | control | 1.58 | MC |
| SRR2338867 | endosprem | control | 0.71 | MC |
| SRR2338868 | endosprem | high_temperature | 0.79 | MC |
| SRR2338869 | endosprem | high_temperature | 1.17 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.42 | MC |
| SRR8060835 | leaf | wild_type | 0.29 | MC |
| SRR8060836 | leaf | wild_type | 0.70 | MC |
| SRR8060837 | leaf | wild_type | 0.44 | MC |
| SRR8240820 | leaf | wild_type | 0.44 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.09 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.44 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 5.16 | MC |
| SRR504365 | leaf | wt | 0.34 | MC |
| SRR6417969 | leaf | H2O_control | 0.93 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.68 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.39 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.07 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.43 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.12 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.24 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.74 | MC |
| SRR1213692 | leaf | wt | 0.28 | MC |
| SRR1213693 | leaf | wt | 0.40 | MC |
| SRR6502088 | leaf | control | 0.59 | MC |
| SRR6502089 | leaf | control | 3.98 | MC |
| SRR6502090 | leaf | control | 1.30 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 2.10 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 4.15 | MC |
| SRR6502101 | leaf | control | 0.85 | MC |
| SRR6502102 | leaf | control | 1.46 | MC |
| SRR5856927 | leaf | control | 0.67 | MC |
| SRR5856928 | leaf | control | 1.05 | MC |
| SRR5856929 | leaf | control | 1.17 | MC |
| SRR5856933 | leaf | control | 0.32 | MC |
| SRR5856934 | leaf | control | 0.77 | MC |
| SRR5856935 | leaf | control | 0.98 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.91 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.14 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 3.75 | MC |
| SRR8582888 | panicle | AM | 0.33 | MC |
| SRR8582889 | panicle | AM | 0.13 | MC |
| SRR8582890 | panicle | AM | 0.21 | MC |
| SRR8582891 | panicle | PM | 2.01 | MC |
| SRR8582892 | panicle | PM | 1.58 | MC |
| SRR8582893 | panicle | PM | 2.75 | MC |
| SRR5110429 | panicle | Dawn | 4.49 | MC |
| SRR5110430 | panicle | Dawn | 1.86 | MC |
| SRR5110432 | panicle | Dawn | 1.20 | MC |
| SRR4947496 | root | control | 0.70 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 2.70 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.40 | MC |
| SRR5110439 | panicle | Dawn + 7h | 2.03 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 4.52 | MC |
| SRR5110449 | panicle | Dawn + 14h | 2.68 | MC |
| SRR5110450 | panicle | Dawn + 14h | 2.70 | MC |
| SRR5110452 | panicle | Dawn + 14h | 5.41 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.39 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 4.15 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 4.52 | MC |
| SRR5110457 | panicle | Dawn + 21h | 3.26 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.48 | MC |
| SRR5110459 | panicle | Dawn + 21h | 2.19 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.75 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.91 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.54 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.73 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.60 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.97 | MC |
| SRR5126149 | root | "mock,1_day" | 2.69 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 3.14 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 4.14 | MC |
| SRR5126153 | root | "mock,7_days" | 0.71 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.86 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 3.72 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.68 | MC |
| SRR5126165 | root | "mock,14_days" | 4.48 | MC |
| SRR5126169 | root | "mock,14_days" | 1.48 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.72 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.56 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.30 | MC |
| SRR1213694 | root | wt | 2.16 | MC |
| SRR1213695 | root | wt | 0.39 | MC |
| SRR4947478 | root | control | 1.43 | MC |
| SRR4947479 | root | control | 0.73 | MC |
| SRR4947480 | root | control | 0.77 | MC |
| SRR4947481 | root | control | 0.91 | MC |
| SRR4947482 | root | Al | 1.93 | MC |
| SRR4947483 | root | Al | 2.67 | MC |
| SRR4947484 | root | Al | 1.27 | MC |
| SRR4947485 | root | Al | 1.82 | MC |
| SRR4947487 | root | control | 1.67 | MC |
| SRR4947488 | root | control | 0.63 | MC |
| SRR4947491 | root | Al | 1.27 | MC |
| SRR4947492 | root | Al | 0.93 | MC |
| SRR4947493 | root | Al | 1.69 | MC |
| SRR4947494 | root | control | 3.21 | MC |
| SRR4947498 | root | Al | 1.33 | MC |
| SRR4947499 | root | Al | 1.70 | MC |
| SRR4947500 | root | Al | 0.98 | MC |
| SRR4947503 | root | control | 2.39 | MC |
| SRR4947504 | root | control | 1.88 | MC |
| SRR4947505 | root | control | 0.90 | MC |
| SRR4947507 | root | Al | 1.46 | MC |
| SRR4947508 | root | Al | 1.62 | MC |
| SRR4947509 | root | Al | 3.20 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.41 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.46 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.42 | MC |
| SRR6502094 | root | control | 0.75 | MC |
| SRR6502095 | root | control | 0.40 | MC |
| SRR6502096 | root | control | 0.74 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.63 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.71 | MC |
| SRR6502107 | root | control | 0.36 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.29 | MC |
| SRR6441555 | seedling | wild_type | 0.23 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.44 | MC |
| SRR1944583 | seedling | no_treatment | 3.01 | MC |
| SRR358793 | seedling | wt | 3.19 | MC |
| SRR358794 | seedling | wt | 2.53 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.61 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.82 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.41 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.05 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.37 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.81 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.46 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.22 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.79 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 3.06 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.57 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.34 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.84 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.95 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.48 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.63 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.87 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.71 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.28 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.05 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.33 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.81 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.46 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.47 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.35 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.55 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.43 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.04 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.63 | MC |