| SRR358795 | callus | wt | 5.54 | MC |
| SRR358796 | callus | wt | 5.39 | MC |
| SRR358797 | callus | wt | 6.80 | MC |
| SRR358798 | callus | wt | 6.84 | MC |
| SRR5560727 | caryopsis | wild_type | 1.34 | MC |
| SRR5560728 | caryopsis | wild_type | 1.30 | MC |
| SRR5560729 | caryopsis | wild_type | 1.73 | MC |
| SRR7265400 | coleoptile | 2dA | 0.80 | MC |
| SRR7265401 | coleoptile | 2dA | 0.94 | MC |
| SRR7265402 | coleoptile | 2dA | 0.81 | MC |
| SRR7265403 | coleoptile | 2dN | 1.12 | MC |
| SRR7265404 | coleoptile | 2dN | 1.07 | MC |
| SRR7265405 | coleoptile | 2dN | 1.01 | MC |
| SRR7265406 | coleoptile | 3dA | 0.82 | MC |
| SRR7265407 | coleoptile | 3dA | 0.75 | MC |
| SRR7265408 | coleoptile | 3dA | 0.40 | MC |
| SRR7265409 | coleoptile | 3dN | 1.56 | MC |
| SRR7265410 | coleoptile | 3dN | 1.11 | MC |
| SRR7265411 | coleoptile | 3dN | 1.30 | MC |
| SRR7265412 | coleoptile | 4dA | 0.47 | MC |
| SRR7265415 | coleoptile | 4dN | 1.51 | MC |
| SRR7265416 | coleoptile | 4dN | 1.60 | MC |
| SRR7265417 | coleoptile | 4dN | 1.59 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.91 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 0.71 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.38 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.54 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.43 | MC |
| SRR7265388 | embryo | 12hA | 1.19 | MC |
| SRR7265389 | embryo | 12hA | 1.23 | MC |
| SRR7265390 | embryo | 12hA | 1.23 | MC |
| SRR7265391 | embryo | 12hN | 0.66 | MC |
| SRR7265392 | embryo | 12hN | 0.95 | MC |
| SRR7265393 | embryo | 12hN | 1.11 | MC |
| SRR7265394 | embryo | 24hA | 1.60 | MC |
| SRR7265395 | embryo | 24hA | 1.49 | MC |
| SRR7265396 | embryo | 24hA | 1.45 | MC |
| SRR7265397 | embryo | 24hN | 1.06 | MC |
| SRR7265398 | embryo | 24hN | 0.80 | MC |
| SRR7265399 | embryo | 24hN | 0.94 | MC |
| SRR2338867 | endosprem | control | 0.79 | MC |
| SRR2338868 | endosprem | high_temperature | 1.02 | MC |
| SRR2338869 | endosprem | high_temperature | 1.03 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.65 | MC |
| SRR1213691 | flower | wt | 1.09 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.33 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.37 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.58 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.27 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 2.89 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 3.39 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.66 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.70 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.13 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.81 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.36 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.76 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.51 | MC |
| SRR1213693 | leaf | wt | 0.41 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.26 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 4.51 | MC |
| SRR6502088 | leaf | control | 1.47 | MC |
| SRR6502089 | leaf | control | 1.86 | MC |
| SRR6502090 | leaf | control | 0.97 | MC |
| SRR5856927 | leaf | control | 2.35 | MC |
| SRR5856928 | leaf | control | 2.29 | MC |
| SRR5856929 | leaf | control | 1.82 | MC |
| SRR5856930 | leaf | salt | 0.56 | MC |
| SRR5856931 | leaf | salt | 0.37 | MC |
| SRR5856932 | leaf | salt | 0.34 | MC |
| SRR5856936 | leaf | salt | 0.65 | MC |
| SRR5856937 | leaf | salt | 0.71 | MC |
| SRR5856938 | leaf | salt | 0.74 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 1.39 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.20 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 5.45 | MC |
| SRR5110429 | panicle | Dawn | 1.23 | MC |
| SRR5110431 | panicle | Dawn | 1.08 | MC |
| SRR5110432 | panicle | Dawn | 2.44 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.47 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.88 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.02 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.57 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.00 | MC |
| SRR5110440 | panicle | Dawn + 7h | 0.80 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 0.71 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.21 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.11 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.89 | MC |
| SRR5110445 | panicle | Dusk | 1.12 | MC |
| SRR5110446 | panicle | Dusk | 1.38 | MC |
| SRR5110447 | panicle | Dusk | 1.49 | MC |
| SRR5110448 | panicle | Dusk | 1.50 | MC |
| SRR5110449 | panicle | Dawn + 14h | 0.98 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.92 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.12 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.53 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.84 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.78 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.73 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 2.40 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.81 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.40 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.49 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.77 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.71 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.99 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.96 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.71 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.92 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.24 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.71 | MC |
| SRR5126147 | root | "mock,1_day" | 1.35 | MC |
| SRR5126148 | root | "mock,1_day" | 0.93 | MC |
| SRR5126149 | root | "mock,1_day" | 0.43 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.34 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 3.16 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.47 | MC |
| SRR5126153 | root | "mock,7_days" | 0.68 | MC |
| SRR5126155 | root | "mock,7_days" | 0.55 | MC |
| SRR5126157 | root | "mock,7_days" | 0.50 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.77 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.28 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 3.10 | MC |
| SRR5126165 | root | "mock,14_days" | 1.01 | MC |
| SRR5126167 | root | "mock,14_days" | 0.53 | MC |
| SRR5126169 | root | "mock,14_days" | 0.52 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.45 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.77 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.93 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.45 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.52 | MC |
| SRR1213694 | root | wt | 0.53 | MC |
| SRR1213695 | root | wt | 0.23 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.09 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.64 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.64 | MC |
| SRR6502094 | root | control | 0.58 | MC |
| SRR6502095 | root | control | 1.17 | MC |
| SRR6502096 | root | control | 0.77 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.61 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.22 | MC |
| SRR1740432 | root_elongation_zone | wt | 2.20 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.45 | MC |
| SRR1740428 | root_meristematic_zone | wt | 0.98 | MC |
| SRR1740429 | root_meristematic_zone | wt | 2.10 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.93 | MC |
| SRR2154087 | seedling | wt | 0.50 | MC |
| SRR3098741 | seedling | wt | 0.39 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.01 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.53 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.72 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.64 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 11.19 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.90 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.06 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.85 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.78 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.20 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.53 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.44 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.62 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 2.01 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.04 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.96 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.86 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.06 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 2.69 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.36 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.96 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.04 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.42 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 2.05 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.88 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 2.84 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 0.89 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.61 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.09 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 0.76 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.16 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.65 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.52 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.82 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.34 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.54 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.15 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.84 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.31 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.60 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.63 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.40 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.29 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.45 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.79 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.33 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.29 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.32 | MC |