| SRR4457251 | 2nd_leaf | DAH4 | 0.31 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.26 | MC |
| SRR358795 | callus | wt | 1.63 | MC |
| SRR358796 | callus | wt | 2.96 | MC |
| SRR358797 | callus | wt | 1.41 | MC |
| SRR358798 | callus | wt | 2.16 | MC |
| SRR5560727 | caryopsis | wild_type | 2.18 | MC |
| SRR5560728 | caryopsis | wild_type | 4.07 | MC |
| SRR5560729 | caryopsis | wild_type | 4.30 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 2.32 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.68 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.35 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.16 | MC |
| SRR2338866 | endosprem | control | 1.27 | MC |
| SRR2338867 | endosprem | control | 0.64 | MC |
| SRR2338868 | endosprem | high_temperature | 1.33 | MC |
| SRR2338869 | endosprem | high_temperature | 1.57 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.26 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.20 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.31 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.35 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.23 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.43 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.39 | MC |
| SRR1213691 | flower | wt | 0.63 | MC |
| SRR8240824 | leaf | wild_type | 0.62 | MC |
| SRR8240825 | leaf | wild_type | 0.24 | MC |
| SRR8240826 | leaf | wild_type | 0.23 | MC |
| SRR8240818 | leaf | wild_type | 0.24 | MC |
| SRR8240819 | leaf | wild_type | 0.85 | MC |
| SRR8240820 | leaf | wild_type | 0.76 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.98 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.03 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.36 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.33 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.93 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.51 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.90 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.82 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.53 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.11 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.89 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.90 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.35 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.22 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.11 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.73 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.42 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.42 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.18 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.28 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 1.45 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.86 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.55 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.07 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.18 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.83 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.19 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.12 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.10 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.10 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.07 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.10 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.01 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.24 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.13 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.25 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.61 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.43 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.72 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 2.27 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.48 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.09 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.72 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 2.27 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.48 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.09 | MC |
| SRR1761528 | leaf | drought | 1.72 | MC |
| SRR1761529 | leaf | drought | 2.26 | MC |
| SRR1761530 | leaf | control | 1.48 | MC |
| SRR1761531 | leaf | control | 1.09 | MC |
| SRR504365 | leaf | wt | 1.03 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.62 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.61 | MC |
| SRR6417968 | leaf | H2O_control | 0.58 | MC |
| SRR6417969 | leaf | H2O_control | 0.42 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.83 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.68 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.59 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 2.02 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.67 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.72 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.21 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.02 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.72 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.95 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.78 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.60 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.35 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.52 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.06 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.97 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.67 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.15 | MC |
| SRR1213692 | leaf | wt | 0.61 | MC |
| SRR1213693 | leaf | wt | 0.43 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.03 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.38 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.28 | MC |
| SRR6502088 | leaf | control | 1.43 | MC |
| SRR6502089 | leaf | control | 1.25 | MC |
| SRR6502090 | leaf | control | 0.84 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.24 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.88 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.78 | MC |
| SRR6502100 | leaf | control | 0.80 | MC |
| SRR6502101 | leaf | control | 1.03 | MC |
| SRR6502102 | leaf | control | 1.75 | MC |
| SRR5856932 | leaf | salt | 1.90 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 5.04 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 2.89 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 2.39 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 1.00 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 3.99 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 2.49 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 5.33 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 4.29 | MC |
| SRR6168975 | leaf | none (control) | 3.20 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.55 | MC |
| SRR6168981 | leaf | none (control) | 1.13 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.21 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.53 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.27 | MC |
| SRR8582888 | panicle | AM | 0.59 | MC |
| SRR8582889 | panicle | AM | 0.47 | MC |
| SRR8582890 | panicle | AM | 0.51 | MC |
| SRR8582891 | panicle | PM | 2.23 | MC |
| SRR8582892 | panicle | PM | 0.91 | MC |
| SRR8582893 | panicle | PM | 2.01 | MC |
| SRR5110430 | panicle | Dawn | 3.61 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 4.66 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 4.06 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.30 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.20 | MC |
| SRR1633182 | panicle | WT | 2.72 | MC |
| SRR1633185 | panicle | WT | 1.37 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.13 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.33 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.28 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 2.43 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 6.39 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 6.35 | MC |
| SRR5126147 | root | "mock,1_day" | 2.42 | MC |
| SRR5126148 | root | "mock,1_day" | 1.99 | MC |
| SRR5126149 | root | "mock,1_day" | 1.55 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.84 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.87 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.30 | MC |
| SRR5126153 | root | "mock,7_days" | 1.17 | MC |
| SRR5126155 | root | "mock,7_days" | 1.71 | MC |
| SRR5126157 | root | "mock,7_days" | 2.27 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.04 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.69 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.08 | MC |
| SRR5126165 | root | "mock,14_days" | 0.73 | MC |
| SRR5126167 | root | "mock,14_days" | 1.42 | MC |
| SRR5126169 | root | "mock,14_days" | 1.60 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.88 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.03 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.57 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.59 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.25 | MC |
| SRR1213694 | root | wt | 0.57 | MC |
| SRR1213695 | root | wt | 0.56 | MC |
| SRR4947480 | root | control | 4.09 | MC |
| SRR4947481 | root | control | 5.09 | MC |
| SRR4947484 | root | Al | 4.83 | MC |
| SRR4947485 | root | Al | 1.95 | MC |
| SRR4947492 | root | Al | 3.69 | MC |
| SRR4947493 | root | Al | 3.16 | MC |
| SRR4947497 | root | control | 3.77 | MC |
| SRR4947500 | root | Al | 4.28 | MC |
| SRR4947501 | root | Al | 4.99 | MC |
| SRR4947508 | root | Al | 3.33 | MC |
| SRR4947509 | root | Al | 4.65 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.98 | MC |
| SRR6502092 | root | 100 mM NaCl | 4.52 | MC |
| SRR6502093 | root | 100 mM NaCl | 3.49 | MC |
| SRR6502094 | root | control | 4.19 | MC |
| SRR6502095 | root | control | 4.06 | MC |
| SRR6502096 | root | control | 2.05 | MC |
| SRR6502103 | root | 100 mM NaCl | 3.56 | MC |
| SRR6502106 | root | control | 3.30 | MC |
| SRR6502107 | root | control | 2.78 | MC |
| SRR6502108 | root | control | 2.46 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.47 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.13 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.88 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.76 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.39 | MC |
| SRR1740433 | root_elongation_zone | wt | 2.05 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.45 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.73 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.45 | MC |
| SRR6441554 | seedling | wild_type | 0.87 | MC |
| SRR6441555 | seedling | wild_type | 0.79 | MC |
| SRR2154086 | seedling | wt | 1.97 | MC |
| SRR2154085 | seedling | wt | 2.22 | MC |
| SRR2154087 | seedling | wt | 1.52 | MC |
| SRR3098741 | seedling | wt | 0.85 | MC |
| SRR3098742 | seedling | wt | 1.03 | MC |
| SRR3098743 | seedling | wt | 1.29 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.27 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.00 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.82 | MC |
| SRR1944583 | seedling | no_treatment | 0.68 | MC |
| SRR358791 | seedling | wt | 2.50 | MC |
| SRR358792 | seedling | wt | 1.74 | MC |
| SRR358793 | seedling | wt | 1.32 | MC |
| SRR358794 | seedling | wt | 1.11 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 13.91 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.83 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.55 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.23 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.11 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.20 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.18 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.33 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.79 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.23 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.18 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.47 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.16 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.56 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.81 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.46 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.39 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.37 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.74 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.33 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.06 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.77 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.52 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.09 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.17 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.64 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.36 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.34 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.94 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.73 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.45 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.97 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.63 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.13 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 7.54 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 5.23 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 6.79 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 7.44 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 7.48 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 8.46 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 7.55 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 5.99 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 7.24 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 6.91 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 5.23 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 7.58 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 7.25 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 7.98 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 8.26 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 2.14 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.24 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.97 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 3.12 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 2.61 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.80 | MC |