| SRR4457250 | 2nd_leaf | DAH4 | 4.14 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 4.00 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 3.94 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 3.54 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 3.50 | MC |
| SRR5560727 | caryopsis | wild_type | 2.90 | MC |
| SRR5560728 | caryopsis | wild_type | 4.93 | MC |
| SRR5560729 | caryopsis | wild_type | 1.82 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.95 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.13 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.30 | MC |
| SRR7265409 | coleoptile | 3dN | 2.99 | MC |
| SRR7265410 | coleoptile | 3dN | 1.15 | MC |
| SRR7265411 | coleoptile | 3dN | 1.45 | MC |
| SRR7265415 | coleoptile | 4dN | 2.14 | MC |
| SRR7265416 | coleoptile | 4dN | 2.10 | MC |
| SRR7265417 | coleoptile | 4dN | 2.12 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.07 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.29 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.45 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.72 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.68 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.71 | MC |
| SRR2338867 | endosprem | control | 0.59 | MC |
| SRR2338868 | endosprem | high_temperature | 1.21 | MC |
| SRR976168 | flag_leaf | wild_type | 3.11 | MC |
| SRR4457243 | flag_leaf | DAH36 | 3.30 | MC |
| SRR4457244 | flag_leaf | DAH36 | 2.17 | MC |
| SRR4457245 | flag_leaf | DAH36 | 3.37 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.98 | MC |
| SRR8240826 | leaf | wild_type | 2.04 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 2.06 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.96 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.01 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.53 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.61 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.59 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.27 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 6.34 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.10 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.73 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.66 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.97 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.52 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.08 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.22 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 6.21 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 3.34 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.85 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.60 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.76 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 5.34 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.78 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.14 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 2.24 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.08 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.35 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.38 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.46 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.38 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.46 | MC |
| SRR1761530 | leaf | control | 1.38 | MC |
| SRR1761531 | leaf | control | 0.46 | MC |
| SRR504365 | leaf | wt | 3.80 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.99 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.77 | MC |
| SRR6417967 | leaf | H2O_control | 0.62 | MC |
| SRR6417968 | leaf | H2O_control | 2.23 | MC |
| SRR6417969 | leaf | H2O_control | 1.04 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.53 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.80 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.50 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 2.33 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 3.29 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.49 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.98 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.46 | MC |
| SRR8611900 | leaf | Non-inoculated | 2.46 | MC |
| SRR8611901 | leaf | Non-inoculated | 3.11 | MC |
| SRR8611902 | leaf | Non-inoculated | 3.25 | MC |
| SRR6502089 | leaf | control | 3.57 | MC |
| SRR6502100 | leaf | control | 3.82 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 1.70 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 4.88 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 5.35 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 1.99 | MC |
| SRR6168973 | leaf | none (control) | 1.03 | MC |
| SRR6168974 | leaf | none (control) | 0.89 | MC |
| SRR6168975 | leaf | none (control) | 3.39 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.74 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.81 | MC |
| SRR8582888 | panicle | AM | 0.45 | MC |
| SRR8582890 | panicle | AM | 0.24 | MC |
| SRR8582891 | panicle | PM | 0.62 | MC |
| SRR8582893 | panicle | PM | 0.36 | MC |
| SRR4947496 | root | control | 2.09 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.01 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.81 | MC |
| SRR1633185 | panicle | WT | 0.56 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 3.67 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.26 | MC |
| SRR4947480 | root | control | 4.47 | MC |
| SRR4947481 | root | control | 3.35 | MC |
| SRR4947484 | root | Al | 4.57 | MC |
| SRR4947488 | root | control | 4.43 | MC |
| SRR4947489 | root | control | 3.04 | MC |
| SRR4947492 | root | Al | 3.81 | MC |
| SRR4947493 | root | Al | 2.47 | MC |
| SRR4947497 | root | control | 2.73 | MC |
| SRR4947500 | root | Al | 2.76 | MC |
| SRR4947501 | root | Al | 2.88 | MC |
| SRR4947508 | root | Al | 4.24 | MC |
| SRR6502091 | root | 100 mM NaCl | 4.50 | MC |
| SRR6502092 | root | 100 mM NaCl | 5.01 | MC |
| SRR6502093 | root | 100 mM NaCl | 5.49 | MC |
| SRR6502094 | root | control | 3.15 | MC |
| SRR6502095 | root | control | 2.81 | MC |
| SRR6502096 | root | control | 4.49 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.26 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.00 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.42 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.96 | MC |
| SRR1740429 | root_meristematic_zone | wt | 2.37 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.27 | MC |
| SRR6441554 | seedling | wild_type | 0.99 | MC |
| SRR6441555 | seedling | wild_type | 1.73 | MC |
| SRR3098742 | seedling | wt | 1.65 | MC |
| SRR3098743 | seedling | wt | 2.11 | MC |
| SRR2857719 | seedling | drought_stress_0h | 4.16 | MC |
| SRR1944583 | seedling | no_treatment | 0.69 | MC |
| SRR358794 | seedling | wt | 4.64 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.39 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.70 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.47 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.02 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.98 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.77 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.25 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 3.14 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.63 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.64 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.70 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.71 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.46 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.91 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.19 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.96 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.68 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.41 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.14 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.77 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.73 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.00 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.08 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.01 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.92 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.28 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.27 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.68 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.84 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.30 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.97 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.26 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.57 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 0.91 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 0.87 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.55 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.57 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 0.52 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.46 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 0.88 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.84 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 8.10 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 5.84 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.69 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.27 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.73 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.66 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.53 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.75 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.91 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.46 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.46 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 2.03 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.95 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.37 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.50 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.07 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.06 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 2.11 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.70 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.13 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.58 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.91 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.82 | MC |