| SRR6320498 | carpel | wt | 3.05 | MC |
| SRR5560727 | caryopsis | wild_type | 1.11 | MC |
| SRR5560729 | caryopsis | wild_type | 1.77 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.55 | MC |
| SRR7265400 | coleoptile | 2dA | 0.65 | MC |
| SRR7265401 | coleoptile | 2dA | 0.45 | MC |
| SRR7265402 | coleoptile | 2dA | 0.65 | MC |
| SRR7265404 | coleoptile | 2dN | 0.38 | MC |
| SRR7265407 | coleoptile | 3dA | 0.29 | MC |
| SRR7265416 | coleoptile | 4dN | 0.47 | MC |
| SRR7265417 | coleoptile | 4dN | 0.59 | MC |
| SRR7265378 | embryo | 1hA | 0.23 | MC |
| SRR7265382 | embryo | 3hA | 0.42 | MC |
| SRR7265384 | embryo | 3hA | 0.33 | MC |
| SRR7265392 | embryo | 12hN | 0.78 | MC |
| SRR7265393 | embryo | 12hN | 0.51 | MC |
| SRR8240824 | leaf | wild_type | 0.34 | MC |
| SRR8240825 | leaf | wild_type | 0.25 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 2.95 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.09 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 4.19 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.52 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.50 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.89 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 3.10 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.62 | MC |
| SRR6502100 | leaf | control | 0.52 | MC |
| SRR5856928 | leaf | control | 1.47 | MC |
| SRR6168973 | leaf | none (control) | 0.60 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.83 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.27 | MC |
| SRR8582889 | panicle | AM | 0.28 | MC |
| SRR8582890 | panicle | AM | 0.39 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.16 | MC |
| SRR5126147 | root | "mock,1_day" | 1.79 | MC |
| SRR5126149 | root | "mock,1_day" | 1.60 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.06 | MC |
| SRR5126153 | root | "mock,7_days" | 1.37 | MC |
| SRR5126155 | root | "mock,7_days" | 2.89 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.63 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.33 | MC |
| SRR5126165 | root | "mock,14_days" | 1.61 | MC |
| SRR5126167 | root | "mock,14_days" | 0.97 | MC |
| SRR5126169 | root | "mock,14_days" | 1.17 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.81 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.50 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.40 | MC |
| SRR6502094 | root | control | 1.68 | MC |
| SRR6502095 | root | control | 1.85 | MC |
| SRR6502096 | root | control | 1.32 | MC |
| SRR6502106 | root | control | 3.72 | MC |
| SRR6502108 | root | control | 3.12 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.29 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.07 | MC |
| SRR6441554 | seedling | wild_type | 0.93 | MC |
| SRR6441555 | seedling | wild_type | 0.62 | MC |
| SRR3098741 | seedling | wt | 0.94 | MC |
| SRR3098742 | seedling | wt | 2.22 | MC |
| SRR3098743 | seedling | wt | 2.35 | MC |
| SRR2857719 | seedling | drought_stress_0h | 2.30 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.21 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.86 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.01 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.15 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.86 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.73 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.73 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.92 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.47 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.38 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.48 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.20 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.42 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.69 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.51 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.36 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.72 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.48 | MC |