| SRR4457249 | 2nd_leaf | DAH4 | 0.85 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.45 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.12 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.49 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.11 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.40 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.71 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.67 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.56 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.84 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.73 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.64 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 0.85 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.57 | MC |
| SRR3745125 | anther | wt | 0.98 | MC |
| SRR3745126 | anther | wt | 0.88 | MC |
| SRR3745127 | anther | wt | 0.72 | MC |
| SRR7265401 | coleoptile | 2dA | 3.55 | MC |
| SRR7265406 | coleoptile | 3dA | 2.70 | MC |
| SRR7265408 | coleoptile | 3dA | 2.08 | MC |
| SRR7265412 | coleoptile | 4dA | 1.92 | MC |
| SRR7265413 | coleoptile | 4dA | 4.23 | MC |
| SRR7265414 | coleoptile | 4dA | 2.49 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 2.16 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 2.52 | MC |
| SRR7265373 | embryo | dry seed 0 h | 2.64 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.77 | MC |
| SRR7265382 | embryo | 3hA | 4.29 | MC |
| SRR7265384 | embryo | 3hA | 3.82 | MC |
| SRR7265386 | embryo | 3hN | 2.67 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.93 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.92 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.14 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.51 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.87 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.57 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.90 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.72 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.61 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.68 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.35 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.70 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.51 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.37 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.78 | MC |
| SRR4457248 | flag_leaf | DAH44 | 0.73 | MC |
| SRR8060835 | leaf | wild_type | 0.91 | MC |
| SRR8060836 | leaf | wild_type | 1.75 | MC |
| SRR8060837 | leaf | wild_type | 1.09 | MC |
| SRR8240824 | leaf | wild_type | 1.06 | MC |
| SRR8240825 | leaf | wild_type | 0.51 | MC |
| SRR8240826 | leaf | wild_type | 0.54 | MC |
| SRR8240819 | leaf | wild_type | 0.51 | MC |
| SRR8240820 | leaf | wild_type | 0.26 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 3.61 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.00 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.17 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.23 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.29 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.34 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.45 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.41 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.60 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.94 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 3.91 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 2.45 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 4.62 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.48 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.52 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.15 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.88 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.91 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.23 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.48 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.87 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 2.38 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 2.16 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 2.53 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.66 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.55 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.97 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.66 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.66 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.55 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.97 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.66 | MC |
| SRR1761528 | leaf | drought | 1.66 | MC |
| SRR1761529 | leaf | drought | 1.55 | MC |
| SRR1761530 | leaf | control | 1.97 | MC |
| SRR1761531 | leaf | control | 1.66 | MC |
| SRR504365 | leaf | wt | 1.21 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.29 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.03 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.02 | MC |
| SRR6417967 | leaf | H2O_control | 1.64 | MC |
| SRR6417968 | leaf | H2O_control | 1.79 | MC |
| SRR6417969 | leaf | H2O_control | 2.66 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.76 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.08 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 2.45 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 2.18 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.18 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.81 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.84 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.25 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.16 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.60 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.81 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 2.78 | MC |
| SRR8611900 | leaf | Non-inoculated | 2.05 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.96 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.77 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.13 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.88 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.30 | MC |
| SRR1213692 | leaf | wt | 2.53 | MC |
| SRR1213693 | leaf | wt | 1.18 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.00 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 2.06 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.87 | MC |
| SRR6502088 | leaf | control | 0.83 | MC |
| SRR6502089 | leaf | control | 1.35 | MC |
| SRR6502090 | leaf | control | 0.96 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.20 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.82 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.49 | MC |
| SRR6502100 | leaf | control | 1.32 | MC |
| SRR6502101 | leaf | control | 0.99 | MC |
| SRR6502102 | leaf | control | 1.17 | MC |
| SRR6168975 | leaf | none (control) | 4.72 | MC |
| SRR8582888 | panicle | AM | 1.60 | MC |
| SRR8582889 | panicle | AM | 1.04 | MC |
| SRR8582890 | panicle | AM | 1.70 | MC |
| SRR8582891 | panicle | PM | 3.36 | MC |
| SRR8582892 | panicle | PM | 3.70 | MC |
| SRR8582893 | panicle | PM | 3.42 | MC |
| SRR4947496 | root | control | 4.26 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 2.95 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.99 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 2.57 | MC |
| SRR1213694 | root | wt | 1.80 | MC |
| SRR1213695 | root | wt | 2.12 | MC |
| SRR4947480 | root | control | 3.50 | MC |
| SRR4947481 | root | control | 5.17 | MC |
| SRR4947484 | root | Al | 4.50 | MC |
| SRR4947485 | root | Al | 4.36 | MC |
| SRR4947488 | root | control | 3.54 | MC |
| SRR4947492 | root | Al | 5.46 | MC |
| SRR4947504 | root | control | 5.15 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.88 | MC |
| SRR6502092 | root | 100 mM NaCl | 3.83 | MC |
| SRR6502093 | root | 100 mM NaCl | 4.23 | MC |
| SRR6502094 | root | control | 3.10 | MC |
| SRR6502095 | root | control | 3.16 | MC |
| SRR6502096 | root | control | 2.63 | MC |
| SRR6502103 | root | 100 mM NaCl | 3.04 | MC |
| SRR6502104 | root | 100 mM NaCl | 4.03 | MC |
| SRR6502105 | root | 100 mM NaCl | 4.40 | MC |
| SRR6502106 | root | control | 2.47 | MC |
| SRR6502107 | root | control | 3.09 | MC |
| SRR6502108 | root | control | 3.69 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.76 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.97 | MC |
| SRR1740436 | root_differentiation_zone | wt | 2.29 | MC |
| SRR1740431 | root_elongation_zone | wt | 2.73 | MC |
| SRR1740428 | root_meristematic_zone | wt | 4.20 | MC |
| SRR6441554 | seedling | wild_type | 2.00 | MC |
| SRR6441555 | seedling | wild_type | 2.59 | MC |
| SRR3098741 | seedling | wt | 1.57 | MC |
| SRR3098742 | seedling | wt | 2.23 | MC |
| SRR3098743 | seedling | wt | 1.66 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.35 | MC |
| SRR1944583 | seedling | no_treatment | 1.03 | MC |
| SRR358791 | seedling | wt | 2.27 | MC |
| SRR358792 | seedling | wt | 2.05 | MC |
| SRR358793 | seedling | wt | 1.23 | MC |
| SRR358794 | seedling | wt | 0.50 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.47 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.58 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.58 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.67 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.59 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.25 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.33 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.55 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.24 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.19 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.35 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.97 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.88 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.60 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.18 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.78 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.51 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.96 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.67 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.17 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.42 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.32 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.72 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.50 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.72 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.61 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.18 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.64 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.71 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.34 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 5.32 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 7.13 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 6.83 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 7.36 | MC |