| SRR4457262 | 2nd_leaf | DAH36 | 0.57 | MC |
| SRR3745127 | anther | wt | 2.16 | MC |
| SRR5560727 | caryopsis | wild_type | 2.37 | MC |
| SRR5560728 | caryopsis | wild_type | 0.62 | MC |
| SRR5560729 | caryopsis | wild_type | 0.77 | MC |
| SRR7265400 | coleoptile | 2dA | 0.85 | MC |
| SRR7265401 | coleoptile | 2dA | 0.61 | MC |
| SRR7265402 | coleoptile | 2dA | 0.62 | MC |
| SRR7265403 | coleoptile | 2dN | 1.58 | MC |
| SRR7265404 | coleoptile | 2dN | 1.33 | MC |
| SRR7265405 | coleoptile | 2dN | 1.27 | MC |
| SRR7265406 | coleoptile | 3dA | 1.13 | MC |
| SRR7265407 | coleoptile | 3dA | 0.89 | MC |
| SRR7265408 | coleoptile | 3dA | 0.68 | MC |
| SRR7265409 | coleoptile | 3dN | 3.17 | MC |
| SRR7265410 | coleoptile | 3dN | 3.02 | MC |
| SRR7265411 | coleoptile | 3dN | 2.83 | MC |
| SRR7265413 | coleoptile | 4dA | 0.53 | MC |
| SRR7265414 | coleoptile | 4dA | 0.49 | MC |
| SRR7265415 | coleoptile | 4dN | 2.46 | MC |
| SRR7265416 | coleoptile | 4dN | 2.13 | MC |
| SRR7265417 | coleoptile | 4dN | 1.89 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.91 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.05 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.82 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.43 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.43 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.80 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.46 | MC |
| SRR7265376 | embryo | 1hA | 0.34 | MC |
| SRR7265377 | embryo | 1hA | 1.36 | MC |
| SRR7265378 | embryo | 1hA | 0.71 | MC |
| SRR7265379 | embryo | 1hN | 0.83 | MC |
| SRR7265381 | embryo | 1hN | 0.61 | MC |
| SRR7265383 | embryo | 3hA | 0.94 | MC |
| SRR7265385 | embryo | 3hN | 0.95 | MC |
| SRR7265386 | embryo | 3hN | 1.13 | MC |
| SRR7265387 | embryo | 3hN | 1.00 | MC |
| SRR7265388 | embryo | 12hA | 3.01 | MC |
| SRR7265389 | embryo | 12hA | 1.47 | MC |
| SRR7265390 | embryo | 12hA | 2.26 | MC |
| SRR7265391 | embryo | 12hN | 1.27 | MC |
| SRR7265392 | embryo | 12hN | 0.92 | MC |
| SRR7265393 | embryo | 12hN | 1.29 | MC |
| SRR7265394 | embryo | 24hA | 1.99 | MC |
| SRR7265395 | embryo | 24hA | 0.89 | MC |
| SRR7265396 | embryo | 24hA | 1.69 | MC |
| SRR7265397 | embryo | 24hN | 1.39 | MC |
| SRR7265398 | embryo | 24hN | 0.82 | MC |
| SRR7265399 | embryo | 24hN | 0.96 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.29 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.34 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.39 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.22 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.69 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.40 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.56 | MC |
| SRR1213691 | flower | wt | 0.45 | MC |
| SRR8240819 | leaf | wild_type | 0.23 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.22 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.14 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.68 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.53 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.46 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.53 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.67 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.04 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.96 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.56 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.74 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.54 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.30 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.94 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.55 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.87 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.87 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.44 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.59 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.37 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.73 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.44 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.83 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.22 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.49 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.15 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.15 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.25 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.00 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.37 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.25 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.54 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.65 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.35 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.70 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.65 | MC |
| SRR6502101 | leaf | control | 0.32 | MC |
| SRR6502102 | leaf | control | 0.38 | MC |
| SRR5856933 | leaf | control | 0.21 | MC |
| SRR6168975 | leaf | none (control) | 3.27 | MC |
| SRR6168979 | leaf | none (control) | 0.53 | MC |
| SRR6168980 | leaf | none (control) | 0.26 | MC |
| SRR6168981 | leaf | none (control) | 1.54 | MC |
| SRR8582888 | panicle | AM | 2.43 | MC |
| SRR8582890 | panicle | AM | 1.14 | MC |
| SRR5110431 | panicle | Dawn | 0.61 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 0.82 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.13 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.33 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.49 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.30 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.59 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.45 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.63 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 2.30 | MC |
| SRR5126147 | root | "mock,1_day" | 0.33 | MC |
| SRR5126148 | root | "mock,1_day" | 0.29 | MC |
| SRR5126153 | root | "mock,7_days" | 0.30 | MC |
| SRR5126155 | root | "mock,7_days" | 0.56 | MC |
| SRR5126157 | root | "mock,7_days" | 0.75 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.60 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.71 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.66 | MC |
| SRR5126169 | root | "mock,14_days" | 0.76 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.49 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.65 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.84 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.42 | MC |
| SRR1213695 | root | wt | 0.15 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.42 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.81 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.44 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.40 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.98 | MC |
| SRR2154086 | seedling | wt | 1.00 | MC |
| SRR2154084 | seedling | wt | 0.28 | MC |
| SRR2154085 | seedling | wt | 0.48 | MC |
| SRR3098741 | seedling | wt | 2.05 | MC |
| SRR3098743 | seedling | wt | 1.87 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.41 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.39 | MC |
| SRR358794 | seedling | wt | 1.91 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.83 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.93 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.69 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.32 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.97 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.08 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.36 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.34 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.76 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.03 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 3.89 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 5.68 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 4.80 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 5.95 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 5.13 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 2.69 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 3.87 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 4.28 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 5.04 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 3.93 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 3.37 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 4.52 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 3.53 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 3.07 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 7.14 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 5.56 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 4.56 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 3.36 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 5.02 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 6.56 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 4.39 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 4.07 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 1.85 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.19 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.38 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.29 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.57 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.39 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.41 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.24 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.38 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.15 | MC |