| SRR4457251 | 2nd_leaf | DAH4 | 0.28 | MC |
| SRR3745125 | anther | wt | 1.63 | MC |
| SRR3745126 | anther | wt | 1.83 | MC |
| SRR3745127 | anther | wt | 2.35 | MC |
| SRR358795 | callus | wt | 3.14 | MC |
| SRR358797 | callus | wt | 3.91 | MC |
| SRR358798 | callus | wt | 5.99 | MC |
| SRR6320473 | carpel | wt | 2.06 | MC |
| SRR6320498 | carpel | wt | 1.02 | MC |
| SRR5560728 | caryopsis | wild_type | 2.44 | MC |
| SRR5560729 | caryopsis | wild_type | 1.94 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.35 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.90 | MC |
| SRR7265406 | coleoptile | 3dA | 3.01 | MC |
| SRR7265407 | coleoptile | 3dA | 1.59 | MC |
| SRR7265408 | coleoptile | 3dA | 1.97 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.84 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.92 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 3.53 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.86 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.67 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.92 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.09 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.59 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 2.74 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.90 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.58 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.43 | MC |
| SRR7265376 | embryo | 1hA | 1.99 | MC |
| SRR7265377 | embryo | 1hA | 2.94 | MC |
| SRR7265379 | embryo | 1hN | 2.81 | MC |
| SRR7265381 | embryo | 1hN | 2.66 | MC |
| SRR2338866 | endosprem | control | 2.43 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.96 | MC |
| SRR1213691 | flower | wt | 1.17 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.20 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.98 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.47 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.70 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.87 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.04 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.14 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.28 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.60 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.30 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.43 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.90 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.54 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.45 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.89 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.08 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.36 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.39 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.93 | MC |
| SRR504365 | leaf | wt | 0.45 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.14 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.39 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.23 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.02 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.66 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 2.60 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.52 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.86 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.28 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.57 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.73 | MC |
| SRR5856927 | leaf | control | 0.59 | MC |
| SRR5856928 | leaf | control | 0.36 | MC |
| SRR5856929 | leaf | control | 1.23 | MC |
| SRR5856930 | leaf | salt | 0.45 | MC |
| SRR5856931 | leaf | salt | 0.43 | MC |
| SRR5856932 | leaf | salt | 0.34 | MC |
| SRR5856933 | leaf | control | 0.86 | MC |
| SRR5856934 | leaf | control | 0.55 | MC |
| SRR5856936 | leaf | salt | 0.47 | MC |
| SRR5856937 | leaf | salt | 0.57 | MC |
| SRR5856938 | leaf | salt | 0.40 | MC |
| SRR6168973 | leaf | none (control) | 1.37 | MC |
| SRR6168974 | leaf | none (control) | 1.67 | MC |
| SRR6168975 | leaf | none (control) | 0.97 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.82 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.64 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.77 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.10 | MC |
| SRR8582891 | panicle | PM | 2.66 | MC |
| SRR8582893 | panicle | PM | 1.80 | MC |
| SRR5110432 | panicle | Dawn | 0.80 | MC |
| SRR4947496 | root | control | 1.40 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.85 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.13 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 2.35 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.49 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.14 | MC |
| SRR5110445 | panicle | Dusk | 2.42 | MC |
| SRR5110446 | panicle | Dusk | 0.38 | MC |
| SRR5110447 | panicle | Dusk | 1.32 | MC |
| SRR5110448 | panicle | Dusk | 0.62 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.31 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.92 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.25 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.73 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.54 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.10 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.65 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.78 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.38 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.71 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.32 | MC |
| SRR5126147 | root | "mock,1_day" | 1.25 | MC |
| SRR5126148 | root | "mock,1_day" | 1.46 | MC |
| SRR5126149 | root | "mock,1_day" | 3.54 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.56 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.42 | MC |
| SRR5126153 | root | "mock,7_days" | 1.47 | MC |
| SRR5126157 | root | "mock,7_days" | 1.70 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 3.52 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.73 | MC |
| SRR5126165 | root | "mock,14_days" | 2.55 | MC |
| SRR5126167 | root | "mock,14_days" | 3.83 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.95 | MC |
| SRR4947478 | root | control | 4.01 | MC |
| SRR4947479 | root | control | 3.22 | MC |
| SRR4947480 | root | control | 2.25 | MC |
| SRR4947481 | root | control | 3.32 | MC |
| SRR4947482 | root | Al | 1.27 | MC |
| SRR4947483 | root | Al | 3.15 | MC |
| SRR4947484 | root | Al | 2.82 | MC |
| SRR4947485 | root | Al | 4.38 | MC |
| SRR4947487 | root | control | 3.41 | MC |
| SRR4947488 | root | control | 2.57 | MC |
| SRR4947489 | root | control | 3.83 | MC |
| SRR4947490 | root | Al | 1.38 | MC |
| SRR4947491 | root | Al | 3.02 | MC |
| SRR4947492 | root | Al | 2.02 | MC |
| SRR4947493 | root | Al | 3.70 | MC |
| SRR4947494 | root | control | 1.62 | MC |
| SRR4947497 | root | control | 2.59 | MC |
| SRR4947498 | root | Al | 2.54 | MC |
| SRR4947499 | root | Al | 2.12 | MC |
| SRR4947500 | root | Al | 1.61 | MC |
| SRR4947501 | root | Al | 2.32 | MC |
| SRR4947503 | root | control | 3.42 | MC |
| SRR4947504 | root | control | 2.27 | MC |
| SRR4947505 | root | control | 2.94 | MC |
| SRR4947506 | root | Al | 2.00 | MC |
| SRR4947507 | root | Al | 4.50 | MC |
| SRR4947508 | root | Al | 1.22 | MC |
| SRR4947509 | root | Al | 1.58 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.25 | MC |
| SRR6502092 | root | 100 mM NaCl | 4.22 | MC |
| SRR6502093 | root | 100 mM NaCl | 3.20 | MC |
| SRR6502094 | root | control | 3.39 | MC |
| SRR6502095 | root | control | 3.31 | MC |
| SRR6502096 | root | control | 2.68 | MC |
| SRR6502103 | root | 100 mM NaCl | 2.39 | MC |
| SRR6502104 | root | 100 mM NaCl | 3.03 | MC |
| SRR6502106 | root | control | 2.03 | MC |
| SRR6502107 | root | control | 1.29 | MC |
| SRR6502108 | root | control | 1.78 | MC |
| SRR6441555 | seedling | wild_type | 0.65 | MC |
| SRR2154086 | seedling | wt | 1.46 | MC |
| SRR2154082 | seedling | wt | 0.77 | MC |
| SRR2154083 | seedling | wt | 1.77 | MC |
| SRR2154084 | seedling | wt | 2.55 | MC |
| SRR2154085 | seedling | wt | 2.39 | MC |
| SRR2154087 | seedling | wt | 0.66 | MC |
| SRR3098741 | seedling | wt | 1.63 | MC |
| SRR3098742 | seedling | wt | 0.96 | MC |
| SRR3098743 | seedling | wt | 2.20 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.13 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.78 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.88 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.52 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.47 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.44 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.39 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.22 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.31 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.31 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.35 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.39 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.38 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.54 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.43 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.35 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.38 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.09 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 6.00 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 2.46 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 4.10 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.13 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.27 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.50 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.76 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.73 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.39 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.30 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.59 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.66 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.69 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.85 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.83 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.02 | MC |