| SRR358795 | callus | wt | 3.63 | MC |
| SRR358796 | callus | wt | 3.51 | MC |
| SRR358797 | callus | wt | 3.26 | MC |
| SRR358798 | callus | wt | 3.63 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 3.06 | MC |
| SRR7265400 | coleoptile | 2dA | 1.95 | MC |
| SRR7265401 | coleoptile | 2dA | 1.88 | MC |
| SRR7265402 | coleoptile | 2dA | 2.03 | MC |
| SRR7265403 | coleoptile | 2dN | 2.99 | MC |
| SRR7265404 | coleoptile | 2dN | 2.38 | MC |
| SRR7265405 | coleoptile | 2dN | 2.66 | MC |
| SRR7265406 | coleoptile | 3dA | 3.47 | MC |
| SRR7265408 | coleoptile | 3dA | 2.26 | MC |
| SRR7265409 | coleoptile | 3dN | 2.94 | MC |
| SRR7265410 | coleoptile | 3dN | 3.06 | MC |
| SRR7265411 | coleoptile | 3dN | 2.94 | MC |
| SRR7265412 | coleoptile | 4dA | 3.18 | MC |
| SRR7265415 | coleoptile | 4dN | 4.56 | MC |
| SRR7265416 | coleoptile | 4dN | 3.66 | MC |
| SRR7265417 | coleoptile | 4dN | 3.70 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 2.83 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 2.62 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 2.49 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.64 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.16 | MC |
| SRR7265373 | embryo | dry seed 0 h | 3.64 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.12 | MC |
| SRR7265376 | embryo | 1hA | 2.03 | MC |
| SRR7265377 | embryo | 1hA | 2.59 | MC |
| SRR7265378 | embryo | 1hA | 2.58 | MC |
| SRR7265379 | embryo | 1hN | 2.46 | MC |
| SRR7265380 | embryo | 1hN | 2.22 | MC |
| SRR7265381 | embryo | 1hN | 2.71 | MC |
| SRR7265382 | embryo | 3hA | 1.03 | MC |
| SRR7265383 | embryo | 3hA | 1.68 | MC |
| SRR7265384 | embryo | 3hA | 1.51 | MC |
| SRR7265385 | embryo | 3hN | 1.68 | MC |
| SRR7265386 | embryo | 3hN | 1.65 | MC |
| SRR7265387 | embryo | 3hN | 1.62 | MC |
| SRR7265388 | embryo | 12hA | 2.60 | MC |
| SRR7265389 | embryo | 12hA | 2.42 | MC |
| SRR7265390 | embryo | 12hA | 2.61 | MC |
| SRR7265391 | embryo | 12hN | 2.02 | MC |
| SRR7265392 | embryo | 12hN | 2.14 | MC |
| SRR7265393 | embryo | 12hN | 2.32 | MC |
| SRR7265394 | embryo | 24hA | 3.27 | MC |
| SRR7265395 | embryo | 24hA | 2.88 | MC |
| SRR7265396 | embryo | 24hA | 3.34 | MC |
| SRR7265397 | embryo | 24hN | 2.76 | MC |
| SRR7265398 | embryo | 24hN | 2.51 | MC |
| SRR7265399 | embryo | 24hN | 2.20 | MC |
| SRR2338866 | endosprem | control | 2.01 | MC |
| SRR2338867 | endosprem | control | 1.44 | MC |
| SRR2338868 | endosprem | high_temperature | 1.89 | MC |
| SRR2338869 | endosprem | high_temperature | 2.26 | MC |
| SRR976168 | flag_leaf | wild_type | 0.54 | MC |
| SRR8240825 | leaf | wild_type | 1.86 | MC |
| SRR8240826 | leaf | wild_type | 1.17 | MC |
| SRR8240818 | leaf | wild_type | 0.34 | MC |
| SRR8240819 | leaf | wild_type | 1.15 | MC |
| SRR8240820 | leaf | wild_type | 1.06 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.94 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.93 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.17 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.69 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.90 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.31 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.31 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.07 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.12 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.94 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.51 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.63 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.02 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 2.59 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 3.56 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.14 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.32 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.23 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.69 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.60 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.92 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.57 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.31 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.29 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 2.00 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 2.25 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 2.00 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 2.25 | MC |
| SRR1761528 | leaf | drought | 2.00 | MC |
| SRR1761529 | leaf | drought | 2.25 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.08 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.52 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.63 | MC |
| SRR6417967 | leaf | H2O_control | 2.41 | MC |
| SRR6417968 | leaf | H2O_control | 1.54 | MC |
| SRR6417969 | leaf | H2O_control | 1.96 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 3.04 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 2.95 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 3.79 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.67 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.00 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.42 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 2.61 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.45 | MC |
| SRR6168975 | leaf | none (control) | 4.98 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.47 | MC |
| SRR6168979 | leaf | none (control) | 0.24 | MC |
| SRR6168980 | leaf | none (control) | 0.65 | MC |
| SRR6168981 | leaf | none (control) | 2.04 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.83 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.41 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.29 | MC |
| SRR5126147 | root | "mock,1_day" | 1.04 | MC |
| SRR5126148 | root | "mock,1_day" | 1.14 | MC |
| SRR5126149 | root | "mock,1_day" | 3.61 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 3.81 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 4.70 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.62 | MC |
| SRR5126153 | root | "mock,7_days" | 1.27 | MC |
| SRR5126155 | root | "mock,7_days" | 2.49 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 4.78 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 4.23 | MC |
| SRR5126165 | root | "mock,14_days" | 4.48 | MC |
| SRR5126167 | root | "mock,14_days" | 2.06 | MC |
| SRR5126169 | root | "mock,14_days" | 3.69 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 4.68 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.34 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.28 | MC |
| SRR1213694 | root | wt | 2.40 | MC |
| SRR2154085 | seedling | wt | 3.76 | MC |
| SRR2857720 | seedling | drought_stress_1h | 3.67 | MC |
| SRR2857721 | seedling | drought_stress_6h | 2.04 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 2.27 | MC |
| SRR358793 | seedling | wt | 3.07 | MC |
| SRR358794 | seedling | wt | 2.60 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.22 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.59 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.45 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.39 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.80 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.22 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.85 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.81 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.34 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.78 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.23 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.95 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.21 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 2.15 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 2.00 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 2.09 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.71 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 2.93 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 2.42 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 2.41 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 2.16 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 2.77 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.81 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.89 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 2.15 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 2.26 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 2.13 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 0.83 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 3.11 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.35 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.72 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 2.67 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.72 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.44 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.72 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.09 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.94 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.60 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 2.61 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.83 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 1.91 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 2.01 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.76 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 2.99 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 2.44 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 2.36 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 3.48 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 2.25 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 2.02 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 3.43 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 4.26 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 3.07 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 2.38 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.98 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 3.08 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 3.20 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.34 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 3.74 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 3.17 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 3.91 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.42 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 2.62 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.22 | MC |