| SRR4457249 | 2nd_leaf | DAH4 | 2.92 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 3.51 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 4.99 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.45 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 4.68 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.22 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.23 | MC |
| SRR7265400 | coleoptile | 2dA | 1.13 | MC |
| SRR7265401 | coleoptile | 2dA | 0.79 | MC |
| SRR7265406 | coleoptile | 3dA | 0.60 | MC |
| SRR7265407 | coleoptile | 3dA | 0.80 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.62 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.69 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 2.34 | MC |
| SRR7265391 | embryo | 12hN | 2.23 | MC |
| SRR7265392 | embryo | 12hN | 2.78 | MC |
| SRR7265393 | embryo | 12hN | 2.46 | MC |
| SRR2338866 | endosprem | control | 1.79 | MC |
| SRR2338867 | endosprem | control | 0.96 | MC |
| SRR2338868 | endosprem | high_temperature | 1.30 | MC |
| SRR2338869 | endosprem | high_temperature | 2.87 | MC |
| SRR4457237 | flag_leaf | DAH20 | 2.69 | MC |
| SRR4457239 | flag_leaf | DAH20 | 3.53 | MC |
| SRR4457241 | flag_leaf | DAH28 | 3.52 | MC |
| SRR4457243 | flag_leaf | DAH36 | 2.64 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.99 | MC |
| SRR4457245 | flag_leaf | DAH36 | 2.29 | MC |
| SRR4457247 | flag_leaf | DAH44 | 5.42 | MC |
| SRR8240818 | leaf | wild_type | 1.19 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 3.78 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.57 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.74 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.05 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.85 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.58 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.28 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.00 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.70 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.19 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.99 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 2.15 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.71 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.94 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.46 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 6.73 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.86 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.76 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.21 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.38 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.48 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.63 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 3.78 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 3.78 | MC |
| SRR1761528 | leaf | drought | 3.78 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.66 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.57 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.84 | MC |
| SRR6417968 | leaf | H2O_control | 1.68 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 3.16 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.28 | MC |
| SRR1213693 | leaf | wt | 1.88 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 3.12 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 3.53 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 2.36 | MC |
| SRR6502088 | leaf | control | 3.55 | MC |
| SRR6502089 | leaf | control | 4.16 | MC |
| SRR6502090 | leaf | control | 3.30 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 3.62 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 4.40 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 2.33 | MC |
| SRR6502100 | leaf | control | 3.43 | MC |
| SRR6502101 | leaf | control | 2.34 | MC |
| SRR6502102 | leaf | control | 2.28 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 5.48 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 1.16 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 2.10 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 5.65 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 5.52 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 3.30 | MC |
| SRR6168974 | leaf | none (control) | 3.09 | MC |
| SRR6168975 | leaf | none (control) | 1.61 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 2.06 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 5.16 | MC |
| SRR6168979 | leaf | none (control) | 0.40 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.39 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 4.47 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.65 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.45 | MC |
| SRR5126147 | root | "mock,1_day" | 2.02 | MC |
| SRR5126148 | root | "mock,1_day" | 0.86 | MC |
| SRR5126149 | root | "mock,1_day" | 4.05 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.28 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.53 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.95 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.96 | MC |
| SRR5126169 | root | "mock,14_days" | 4.03 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.26 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.77 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.75 | MC |
| SRR1213694 | root | wt | 0.37 | MC |
| SRR4947482 | root | Al | 3.61 | MC |
| SRR4947490 | root | Al | 4.39 | MC |
| SRR4947491 | root | Al | 1.80 | MC |
| SRR4947506 | root | Al | 1.88 | MC |
| SRR4947507 | root | Al | 1.03 | MC |
| SRR4947508 | root | Al | 2.90 | MC |
| SRR4947509 | root | Al | 2.56 | MC |
| SRR6441554 | seedling | wild_type | 2.48 | MC |
| SRR6441555 | seedling | wild_type | 2.72 | MC |
| SRR358791 | seedling | wt | 7.50 | MC |
| SRR358792 | seedling | wt | 5.27 | MC |
| SRR358793 | seedling | wt | 2.72 | MC |
| SRR358794 | seedling | wt | 5.65 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.39 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.39 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.89 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.28 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.92 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.86 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.98 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.29 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 2.71 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.12 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 2.31 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.98 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.63 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.47 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 2.21 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 2.65 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 3.38 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 3.46 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.64 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 2.22 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 5.23 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.18 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 2.53 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 3.26 | MC |