| SRR4457249 | 2nd_leaf | DAH4 | 5.15 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 4.67 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 3.12 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 3.13 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 2.95 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 3.59 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 3.13 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 2.01 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.96 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.37 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 3.33 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 3.28 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 2.13 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.95 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.63 | MC |
| SRR3745125 | anther | wt | 1.01 | MC |
| SRR3745126 | anther | wt | 1.73 | MC |
| SRR3745127 | anther | wt | 0.97 | MC |
| SRR358795 | callus | wt | 6.88 | MC |
| SRR358796 | callus | wt | 6.67 | MC |
| SRR358797 | callus | wt | 8.05 | MC |
| SRR6320498 | carpel | wt | 1.41 | MC |
| SRR5560727 | caryopsis | wild_type | 4.42 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.87 | MC |
| SRR4947495 | root | control | 4.74 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 4.03 | MC |
| SRR7265415 | coleoptile | 4dN | 4.51 | MC |
| SRR7265416 | coleoptile | 4dN | 4.07 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.62 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.34 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.31 | MC |
| SRR7265376 | embryo | 1hA | 1.32 | MC |
| SRR7265377 | embryo | 1hA | 1.32 | MC |
| SRR7265378 | embryo | 1hA | 1.55 | MC |
| SRR7265379 | embryo | 1hN | 1.32 | MC |
| SRR7265380 | embryo | 1hN | 1.36 | MC |
| SRR7265381 | embryo | 1hN | 1.69 | MC |
| SRR7265382 | embryo | 3hA | 3.28 | MC |
| SRR7265383 | embryo | 3hA | 2.55 | MC |
| SRR7265384 | embryo | 3hA | 2.74 | MC |
| SRR7265385 | embryo | 3hN | 1.81 | MC |
| SRR7265386 | embryo | 3hN | 1.50 | MC |
| SRR7265387 | embryo | 3hN | 0.94 | MC |
| SRR2338867 | endosprem | control | 0.58 | MC |
| SRR2338868 | endosprem | high_temperature | 0.94 | MC |
| SRR2338869 | endosprem | high_temperature | 1.66 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.87 | MC |
| SRR4457232 | flag_leaf | DAH4 | 2.53 | MC |
| SRR4457233 | flag_leaf | DAH4 | 2.77 | MC |
| SRR4457234 | flag_leaf | DAH12 | 2.10 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.64 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.76 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.75 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.74 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.22 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.58 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.94 | MC |
| SRR4457243 | flag_leaf | DAH36 | 2.75 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.89 | MC |
| SRR4457247 | flag_leaf | DAH44 | 0.72 | MC |
| SRR4457248 | flag_leaf | DAH44 | 0.81 | MC |
| SRR8060835 | leaf | wild_type | 2.21 | MC |
| SRR8060836 | leaf | wild_type | 1.92 | MC |
| SRR8060837 | leaf | wild_type | 1.98 | MC |
| SRR8240824 | leaf | wild_type | 1.88 | MC |
| SRR8240825 | leaf | wild_type | 0.81 | MC |
| SRR8240826 | leaf | wild_type | 0.93 | MC |
| SRR8240818 | leaf | wild_type | 1.40 | MC |
| SRR8240819 | leaf | wild_type | 1.09 | MC |
| SRR8240820 | leaf | wild_type | 1.89 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 2.56 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 2.34 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 2.56 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 2.34 | MC |
| SRR1761528 | leaf | drought | 2.56 | MC |
| SRR1761529 | leaf | drought | 2.34 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.09 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.38 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.70 | MC |
| SRR6417967 | leaf | H2O_control | 1.37 | MC |
| SRR6417968 | leaf | H2O_control | 0.92 | MC |
| SRR6417969 | leaf | H2O_control | 1.42 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 2.36 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 2.01 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.50 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 2.31 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.40 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.81 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.72 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.92 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.37 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.89 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.88 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.39 | MC |
| SRR1213692 | leaf | wt | 4.18 | MC |
| SRR1213693 | leaf | wt | 3.57 | MC |
| SRR6502089 | leaf | control | 4.28 | MC |
| SRR6502090 | leaf | control | 2.85 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 4.19 | MC |
| SRR6502101 | leaf | control | 2.83 | MC |
| SRR6502102 | leaf | control | 3.17 | MC |
| SRR5856927 | leaf | control | 1.65 | MC |
| SRR5856929 | leaf | control | 1.69 | MC |
| SRR5856930 | leaf | salt | 0.84 | MC |
| SRR5856931 | leaf | salt | 0.84 | MC |
| SRR5856932 | leaf | salt | 0.78 | MC |
| SRR5856934 | leaf | control | 2.02 | MC |
| SRR5856936 | leaf | salt | 0.72 | MC |
| SRR5856937 | leaf | salt | 0.95 | MC |
| SRR5856938 | leaf | salt | 0.76 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.20 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 2.19 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 2.89 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.03 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 2.61 | MC |
| SRR6168979 | leaf | none (control) | 0.57 | MC |
| SRR8582888 | panicle | AM | 2.73 | MC |
| SRR8582889 | panicle | AM | 1.34 | MC |
| SRR5110429 | panicle | Dawn | 3.28 | MC |
| SRR5110430 | panicle | Dawn | 2.04 | MC |
| SRR5110431 | panicle | Dawn | 2.68 | MC |
| SRR5110432 | panicle | Dawn | 3.80 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 2.30 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 2.36 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.42 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 3.98 | MC |
| SRR5110437 | panicle | Dawn + 7h | 2.79 | MC |
| SRR5110438 | panicle | Dawn + 7h | 3.53 | MC |
| SRR5110439 | panicle | Dawn + 7h | 2.29 | MC |
| SRR5110440 | panicle | Dawn + 7h | 3.90 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 2.58 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 3.16 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 3.19 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 4.55 | MC |
| SRR5110445 | panicle | Dusk | 3.20 | MC |
| SRR5110446 | panicle | Dusk | 3.86 | MC |
| SRR5110447 | panicle | Dusk | 4.23 | MC |
| SRR5110448 | panicle | Dusk | 4.45 | MC |
| SRR5110449 | panicle | Dawn + 14h | 2.13 | MC |
| SRR5110450 | panicle | Dawn + 14h | 3.01 | MC |
| SRR5110451 | panicle | Dawn + 14h | 2.95 | MC |
| SRR5110452 | panicle | Dawn + 14h | 3.65 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 2.75 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.81 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 2.53 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 5.06 | MC |
| SRR5110457 | panicle | Dawn + 21h | 2.39 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.50 | MC |
| SRR5110459 | panicle | Dawn + 21h | 3.74 | MC |
| SRR5110460 | panicle | Dawn + 21h | 3.78 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.80 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.88 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.68 | MC |
| SRR1213694 | root | wt | 2.52 | MC |
| SRR4947478 | root | control | 3.11 | MC |
| SRR4947479 | root | control | 3.53 | MC |
| SRR4947482 | root | Al | 1.95 | MC |
| SRR4947483 | root | Al | 3.91 | MC |
| SRR4947487 | root | control | 2.97 | MC |
| SRR4947490 | root | Al | 3.27 | MC |
| SRR4947494 | root | control | 2.38 | MC |
| SRR4947498 | root | Al | 3.87 | MC |
| SRR4947499 | root | Al | 4.16 | MC |
| SRR4947502 | root | control | 5.44 | MC |
| SRR4947506 | root | Al | 1.94 | MC |
| SRR4947507 | root | Al | 4.53 | MC |
| SRR4947508 | root | Al | 5.18 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.63 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.95 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.55 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.98 | MC |
| SRR1740433 | root_elongation_zone | wt | 3.24 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.33 | MC |
| SRR1740429 | root_meristematic_zone | wt | 2.00 | MC |
| SRR1740430 | root_meristematic_zone | wt | 2.67 | MC |
| SRR6441554 | seedling | wild_type | 1.90 | MC |
| SRR6441555 | seedling | wild_type | 3.13 | MC |
| SRR3098742 | seedling | wt | 2.59 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.53 | MC |
| SRR1944583 | seedling | no_treatment | 4.24 | MC |
| SRR358791 | seedling | wt | 6.83 | MC |
| SRR358792 | seedling | wt | 6.58 | MC |
| SRR358793 | seedling | wt | 3.99 | MC |
| SRR358794 | seedling | wt | 3.44 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.55 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.06 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.16 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.90 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.93 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.79 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.12 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.76 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.68 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.82 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.90 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.23 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.37 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.11 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.59 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 2.28 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 2.07 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.65 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 2.25 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.29 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.72 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.50 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.00 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.57 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.40 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.45 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.93 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.25 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.91 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.86 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.78 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 3.87 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.93 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 3.96 | MC |