| SRR4457249 | 2nd_leaf | DAH4 | 4.23 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 3.38 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 4.25 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 2.65 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 2.48 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 2.51 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.43 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 3.88 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 2.26 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 5.05 | MC |
| SRR4947495 | root | control | 3.02 | MC |
| SRR7265412 | coleoptile | 4dA | 2.94 | MC |
| SRR7265415 | coleoptile | 4dN | 4.44 | MC |
| SRR7265416 | coleoptile | 4dN | 3.69 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 3.95 | MC |
| SRR7265394 | embryo | 24hA | 4.90 | MC |
| SRR2338866 | endosprem | control | 1.60 | MC |
| SRR2338867 | endosprem | control | 1.35 | MC |
| SRR2338868 | endosprem | high_temperature | 1.08 | MC |
| SRR2338869 | endosprem | high_temperature | 0.89 | MC |
| SRR976168 | flag_leaf | wild_type | 0.67 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.68 | MC |
| SRR4457232 | flag_leaf | DAH4 | 2.37 | MC |
| SRR4457233 | flag_leaf | DAH4 | 2.79 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.91 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.78 | MC |
| SRR4457236 | flag_leaf | DAH12 | 2.29 | MC |
| SRR4457237 | flag_leaf | DAH20 | 2.43 | MC |
| SRR4457238 | flag_leaf | DAH20 | 2.37 | MC |
| SRR4457239 | flag_leaf | DAH20 | 2.23 | MC |
| SRR4457240 | flag_leaf | DAH28 | 2.33 | MC |
| SRR4457241 | flag_leaf | DAH28 | 2.80 | MC |
| SRR4457242 | flag_leaf | DAH28 | 2.79 | MC |
| SRR4457243 | flag_leaf | DAH36 | 2.33 | MC |
| SRR4457244 | flag_leaf | DAH36 | 2.26 | MC |
| SRR4457245 | flag_leaf | DAH36 | 2.23 | MC |
| SRR4457246 | flag_leaf | DAH44 | 3.58 | MC |
| SRR4457247 | flag_leaf | DAH44 | 2.87 | MC |
| SRR4457248 | flag_leaf | DAH44 | 4.89 | MC |
| SRR8060835 | leaf | wild_type | 1.70 | MC |
| SRR8060836 | leaf | wild_type | 2.67 | MC |
| SRR8060837 | leaf | wild_type | 2.02 | MC |
| SRR8240824 | leaf | wild_type | 1.39 | MC |
| SRR8240825 | leaf | wild_type | 0.63 | MC |
| SRR8240826 | leaf | wild_type | 0.30 | MC |
| SRR8240820 | leaf | wild_type | 0.40 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.81 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.15 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.58 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.17 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.48 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.96 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.23 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.28 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 4.13 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.09 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 5.48 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.31 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.98 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.33 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 2.57 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 2.16 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.87 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 3.84 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 2.49 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 2.12 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 3.84 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 2.49 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 2.12 | MC |
| SRR1761529 | leaf | drought | 3.84 | MC |
| SRR1761530 | leaf | control | 2.49 | MC |
| SRR1761531 | leaf | control | 2.12 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.68 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.39 | MC |
| SRR6417967 | leaf | H2O_control | 1.39 | MC |
| SRR6417968 | leaf | H2O_control | 0.99 | MC |
| SRR6417969 | leaf | H2O_control | 0.58 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.58 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.58 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.33 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.71 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 3.06 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.77 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.46 | MC |
| SRR8611901 | leaf | Non-inoculated | 3.64 | MC |
| SRR1213692 | leaf | wt | 3.27 | MC |
| SRR1213693 | leaf | wt | 1.48 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.57 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.82 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 2.23 | MC |
| SRR6502088 | leaf | control | 1.83 | MC |
| SRR6502089 | leaf | control | 0.99 | MC |
| SRR6502090 | leaf | control | 0.97 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.68 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 3.25 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.06 | MC |
| SRR6502100 | leaf | control | 1.79 | MC |
| SRR6502101 | leaf | control | 1.53 | MC |
| SRR6502102 | leaf | control | 1.59 | MC |
| SRR5856927 | leaf | control | 1.02 | MC |
| SRR5856928 | leaf | control | 0.73 | MC |
| SRR5856929 | leaf | control | 0.96 | MC |
| SRR5856930 | leaf | salt | 0.81 | MC |
| SRR5856931 | leaf | salt | 0.88 | MC |
| SRR5856932 | leaf | salt | 0.80 | MC |
| SRR5856933 | leaf | control | 1.88 | MC |
| SRR5856934 | leaf | control | 1.13 | MC |
| SRR5856935 | leaf | control | 1.33 | MC |
| SRR5856936 | leaf | salt | 1.63 | MC |
| SRR5856937 | leaf | salt | 1.52 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 3.50 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 5.19 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 4.02 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 4.47 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 3.49 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 1.48 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 5.73 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 2.51 | MC |
| SRR8582890 | panicle | AM | 0.40 | MC |
| SRR8582891 | panicle | PM | 2.80 | MC |
| SRR8582892 | panicle | PM | 4.40 | MC |
| SRR8582893 | panicle | PM | 2.57 | MC |
| SRR4947496 | root | control | 2.22 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.98 | MC |
| SRR5126148 | root | "mock,1_day" | 3.24 | MC |
| SRR5126149 | root | "mock,1_day" | 3.55 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 3.20 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.66 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 3.68 | MC |
| SRR5126157 | root | "mock,7_days" | 5.43 | MC |
| SRR5126165 | root | "mock,14_days" | 4.55 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 4.39 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.77 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.82 | MC |
| SRR1213694 | root | wt | 3.04 | MC |
| SRR1213695 | root | wt | 1.97 | MC |
| SRR4947478 | root | control | 1.86 | MC |
| SRR4947479 | root | control | 1.90 | MC |
| SRR4947480 | root | control | 2.65 | MC |
| SRR4947481 | root | control | 3.92 | MC |
| SRR4947482 | root | Al | 1.97 | MC |
| SRR4947483 | root | Al | 2.61 | MC |
| SRR4947484 | root | Al | 3.75 | MC |
| SRR4947485 | root | Al | 3.38 | MC |
| SRR4947487 | root | control | 1.68 | MC |
| SRR4947488 | root | control | 2.76 | MC |
| SRR4947489 | root | control | 3.08 | MC |
| SRR4947490 | root | Al | 2.08 | MC |
| SRR4947491 | root | Al | 3.90 | MC |
| SRR4947492 | root | Al | 3.97 | MC |
| SRR4947493 | root | Al | 2.91 | MC |
| SRR4947494 | root | control | 2.14 | MC |
| SRR4947497 | root | control | 4.42 | MC |
| SRR4947498 | root | Al | 3.96 | MC |
| SRR4947499 | root | Al | 3.20 | MC |
| SRR4947500 | root | Al | 3.64 | MC |
| SRR4947501 | root | Al | 5.72 | MC |
| SRR4947502 | root | control | 2.85 | MC |
| SRR4947503 | root | control | 1.93 | MC |
| SRR4947504 | root | control | 2.86 | MC |
| SRR4947505 | root | control | 3.05 | MC |
| SRR4947506 | root | Al | 1.93 | MC |
| SRR4947507 | root | Al | 3.66 | MC |
| SRR4947508 | root | Al | 3.30 | MC |
| SRR4947509 | root | Al | 2.78 | MC |
| SRR6502094 | root | control | 3.93 | MC |
| SRR6502095 | root | control | 3.77 | MC |
| SRR6502096 | root | control | 3.44 | MC |
| SRR6502106 | root | control | 4.30 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.82 | MC |
| SRR1740431 | root_elongation_zone | wt | 3.90 | MC |
| SRR1740428 | root_meristematic_zone | wt | 4.13 | MC |
| SRR2154086 | seedling | wt | 4.06 | MC |
| SRR2154085 | seedling | wt | 3.85 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 1.85 | MC |
| SRR1944583 | seedling | no_treatment | 2.63 | MC |
| SRR358791 | seedling | wt | 3.47 | MC |
| SRR358792 | seedling | wt | 3.55 | MC |
| SRR358793 | seedling | wt | 0.84 | MC |
| SRR358794 | seedling | wt | 0.99 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.79 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.71 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.44 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.52 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.83 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.17 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.41 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.57 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.77 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.08 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.48 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.96 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.93 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.04 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.47 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.78 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.61 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.32 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.32 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.36 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.49 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.84 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.18 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.78 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.91 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.69 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.58 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.10 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.56 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.13 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.87 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.74 | MC |