| SRR3745125 | anther | wt | 1.09 | MC |
| SRR3745126 | anther | wt | 0.87 | MC |
| SRR3745127 | anther | wt | 0.58 | MC |
| SRR358795 | callus | wt | 5.47 | MC |
| SRR358796 | callus | wt | 5.25 | MC |
| SRR358797 | callus | wt | 6.77 | MC |
| SRR358798 | callus | wt | 5.09 | MC |
| SRR5560727 | caryopsis | wild_type | 0.47 | MC |
| SRR5560729 | caryopsis | wild_type | 0.38 | MC |
| SRR7265400 | coleoptile | 2dA | 0.42 | MC |
| SRR7265401 | coleoptile | 2dA | 0.39 | MC |
| SRR7265402 | coleoptile | 2dA | 0.60 | MC |
| SRR7265403 | coleoptile | 2dN | 0.86 | MC |
| SRR7265404 | coleoptile | 2dN | 0.65 | MC |
| SRR7265405 | coleoptile | 2dN | 0.80 | MC |
| SRR7265411 | coleoptile | 3dN | 0.32 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.95 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.75 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.77 | MC |
| SRR7265376 | embryo | 1hA | 0.50 | MC |
| SRR7265377 | embryo | 1hA | 0.87 | MC |
| SRR7265378 | embryo | 1hA | 0.63 | MC |
| SRR7265379 | embryo | 1hN | 0.41 | MC |
| SRR7265381 | embryo | 1hN | 0.72 | MC |
| SRR7265382 | embryo | 3hA | 0.41 | MC |
| SRR7265384 | embryo | 3hA | 0.31 | MC |
| SRR7265385 | embryo | 3hN | 0.41 | MC |
| SRR7265386 | embryo | 3hN | 0.54 | MC |
| SRR7265387 | embryo | 3hN | 0.24 | MC |
| SRR7265388 | embryo | 12hA | 1.32 | MC |
| SRR7265389 | embryo | 12hA | 1.98 | MC |
| SRR7265390 | embryo | 12hA | 1.53 | MC |
| SRR7265391 | embryo | 12hN | 1.05 | MC |
| SRR7265392 | embryo | 12hN | 0.92 | MC |
| SRR7265393 | embryo | 12hN | 0.91 | MC |
| SRR7265394 | embryo | 24hA | 0.95 | MC |
| SRR7265395 | embryo | 24hA | 1.10 | MC |
| SRR7265396 | embryo | 24hA | 1.01 | MC |
| SRR7265397 | embryo | 24hN | 1.18 | MC |
| SRR7265398 | embryo | 24hN | 1.62 | MC |
| SRR7265399 | embryo | 24hN | 0.98 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.20 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.52 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.25 | MC |
| SRR1213691 | flower | wt | 1.14 | MC |
| SRR8240825 | leaf | wild_type | 0.30 | MC |
| SRR8240819 | leaf | wild_type | 0.22 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.42 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.68 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.59 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.59 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.48 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.56 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.47 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.31 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.66 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.69 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.35 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.34 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.06 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.71 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.58 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.80 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.05 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.71 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.58 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.80 | MC |
| SRR1761528 | leaf | drought | 1.05 | MC |
| SRR1761529 | leaf | drought | 0.71 | MC |
| SRR1761530 | leaf | control | 0.58 | MC |
| SRR1761531 | leaf | control | 0.80 | MC |
| SRR504365 | leaf | wt | 0.50 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.43 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.44 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.73 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.53 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.25 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.33 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.53 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.44 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.61 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.21 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.66 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.34 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.35 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.76 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.60 | MC |
| SRR1213692 | leaf | wt | 0.33 | MC |
| SRR1213693 | leaf | wt | 0.37 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.79 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.69 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.90 | MC |
| SRR6502088 | leaf | control | 0.37 | MC |
| SRR6502089 | leaf | control | 0.53 | MC |
| SRR6502090 | leaf | control | 0.66 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.47 | MC |
| SRR6502100 | leaf | control | 0.45 | MC |
| SRR6502101 | leaf | control | 0.69 | MC |
| SRR5856927 | leaf | control | 0.44 | MC |
| SRR5856928 | leaf | control | 0.27 | MC |
| SRR5856929 | leaf | control | 0.17 | MC |
| SRR5856933 | leaf | control | 0.25 | MC |
| SRR5856935 | leaf | control | 0.29 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.30 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.27 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.64 | MC |
| SRR5126147 | root | "mock,1_day" | 2.35 | MC |
| SRR5126148 | root | "mock,1_day" | 1.60 | MC |
| SRR5126149 | root | "mock,1_day" | 1.92 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.87 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.54 | MC |
| SRR5126153 | root | "mock,7_days" | 1.49 | MC |
| SRR5126155 | root | "mock,7_days" | 1.34 | MC |
| SRR5126157 | root | "mock,7_days" | 0.48 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.94 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.42 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.96 | MC |
| SRR5126165 | root | "mock,14_days" | 1.70 | MC |
| SRR5126167 | root | "mock,14_days" | 0.77 | MC |
| SRR5126169 | root | "mock,14_days" | 1.89 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.05 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.05 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.69 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.56 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.74 | MC |
| SRR1213694 | root | wt | 0.41 | MC |
| SRR1213695 | root | wt | 0.25 | MC |
| SRR4947481 | root | control | 0.72 | MC |
| SRR4947485 | root | Al | 0.72 | MC |
| SRR4947493 | root | Al | 0.93 | MC |
| SRR4947497 | root | control | 1.04 | MC |
| SRR4947500 | root | Al | 0.58 | MC |
| SRR4947501 | root | Al | 0.87 | MC |
| SRR4947505 | root | control | 0.63 | MC |
| SRR4947509 | root | Al | 0.53 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.94 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.55 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.20 | MC |
| SRR6502094 | root | control | 0.63 | MC |
| SRR6502095 | root | control | 1.08 | MC |
| SRR6502096 | root | control | 0.66 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.97 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.14 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.36 | MC |
| SRR6502106 | root | control | 0.91 | MC |
| SRR6502107 | root | control | 0.97 | MC |
| SRR6502108 | root | control | 0.92 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.39 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.84 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.47 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.46 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.97 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.27 | MC |
| SRR1740428 | root_meristematic_zone | wt | 2.26 | MC |
| SRR2154086 | seedling | wt | 0.56 | MC |
| SRR2154084 | seedling | wt | 0.59 | MC |
| SRR2154085 | seedling | wt | 0.39 | MC |
| SRR2154087 | seedling | wt | 0.62 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.33 | MC |
| SRR358791 | seedling | wt | 1.02 | MC |
| SRR358794 | seedling | wt | 0.60 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.90 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.35 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.34 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 12.32 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.17 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.28 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.23 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.67 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.91 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.42 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.60 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.30 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.51 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.54 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.26 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.48 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.39 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.51 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.38 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.48 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 3.83 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 5.92 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 4.52 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 4.07 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 4.96 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 4.51 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 3.12 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 4.89 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 3.98 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 4.38 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 4.04 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 3.55 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 2.78 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 3.02 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 2.70 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 2.62 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 3.52 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 2.93 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 3.12 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 4.01 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 4.11 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 3.28 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 3.89 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 2.56 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 2.83 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.76 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.87 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 2.85 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.14 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.33 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 2.28 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.68 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.51 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.02 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.84 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.09 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.36 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.02 | MC |