| SRR4457254 | 2nd_leaf | DAH12 | 3.26 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 3.14 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 2.74 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 2.94 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.99 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.02 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.16 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 4.68 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 2.40 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.14 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.58 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 3.21 | MC |
| SRR3745125 | anther | wt | 2.69 | MC |
| SRR3745126 | anther | wt | 2.47 | MC |
| SRR3745127 | anther | wt | 1.34 | MC |
| SRR358795 | callus | wt | 3.04 | MC |
| SRR358796 | callus | wt | 4.39 | MC |
| SRR358797 | callus | wt | 3.47 | MC |
| SRR358798 | callus | wt | 4.34 | MC |
| SRR6320473 | carpel | wt | 3.71 | MC |
| SRR7265416 | coleoptile | 4dN | 4.20 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 4.03 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 3.68 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 3.85 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 2.87 | MC |
| SRR7265380 | embryo | 1hN | 3.54 | MC |
| SRR7265382 | embryo | 3hA | 4.32 | MC |
| SRR7265383 | embryo | 3hA | 3.60 | MC |
| SRR7265387 | embryo | 3hN | 3.03 | MC |
| SRR2338866 | endosprem | control | 1.45 | MC |
| SRR2338867 | endosprem | control | 1.76 | MC |
| SRR2338868 | endosprem | high_temperature | 1.24 | MC |
| SRR2338869 | endosprem | high_temperature | 2.11 | MC |
| SRR976168 | flag_leaf | wild_type | 1.94 | MC |
| SRR4457237 | flag_leaf | DAH20 | 2.17 | MC |
| SRR4457238 | flag_leaf | DAH20 | 3.38 | MC |
| SRR4457239 | flag_leaf | DAH20 | 3.58 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.02 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.68 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.49 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.97 | MC |
| SRR4457247 | flag_leaf | DAH44 | 0.81 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.23 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.92 | MC |
| SRR1213691 | flower | wt | 3.55 | MC |
| SRR8240824 | leaf | wild_type | 1.04 | MC |
| SRR8240825 | leaf | wild_type | 1.49 | MC |
| SRR8240826 | leaf | wild_type | 1.14 | MC |
| SRR8240819 | leaf | wild_type | 1.01 | MC |
| SRR8240820 | leaf | wild_type | 0.93 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.94 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.62 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.39 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.09 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.57 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.64 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.98 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.87 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.15 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.03 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.69 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.64 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.55 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.91 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.27 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 0.96 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 2.77 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.47 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.84 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.30 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.01 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.39 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.47 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.30 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.68 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.17 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.86 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.41 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.97 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.33 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.89 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 3.51 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.16 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 2.36 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.51 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.12 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.39 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.80 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.51 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.12 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.39 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.80 | MC |
| SRR1761528 | leaf | drought | 0.51 | MC |
| SRR1761529 | leaf | drought | 1.12 | MC |
| SRR1761530 | leaf | control | 1.39 | MC |
| SRR1761531 | leaf | control | 0.80 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.59 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.53 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.70 | MC |
| SRR6417967 | leaf | H2O_control | 1.11 | MC |
| SRR6417968 | leaf | H2O_control | 1.38 | MC |
| SRR6417969 | leaf | H2O_control | 1.09 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.80 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.95 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.53 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.85 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 2.36 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.16 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.45 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.47 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 2.02 | MC |
| SRR1213692 | leaf | wt | 3.65 | MC |
| SRR1213693 | leaf | wt | 2.07 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 3.89 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 2.75 | MC |
| SRR6502089 | leaf | control | 3.77 | MC |
| SRR6502090 | leaf | control | 2.79 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 3.37 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 3.27 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 2.18 | MC |
| SRR6502102 | leaf | control | 3.67 | MC |
| SRR5856927 | leaf | control | 2.23 | MC |
| SRR5856930 | leaf | salt | 1.23 | MC |
| SRR5856931 | leaf | salt | 1.70 | MC |
| SRR5856932 | leaf | salt | 1.40 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 2.25 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 2.10 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 4.16 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 9.18 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 6.33 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 3.52 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.47 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 3.50 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 5.90 | MC |
| SRR6168974 | leaf | none (control) | 3.98 | MC |
| SRR6168975 | leaf | none (control) | 3.60 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.50 | MC |
| SRR6168979 | leaf | none (control) | 0.49 | MC |
| SRR6168980 | leaf | none (control) | 1.17 | MC |
| SRR5110429 | panicle | Dawn | 3.92 | MC |
| SRR5110430 | panicle | Dawn | 3.81 | MC |
| SRR5110431 | panicle | Dawn | 2.08 | MC |
| SRR5110432 | panicle | Dawn | 2.92 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 2.02 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 2.29 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.52 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 3.15 | MC |
| SRR5110437 | panicle | Dawn + 7h | 2.60 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.07 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.87 | MC |
| SRR5110440 | panicle | Dawn + 7h | 2.31 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.49 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.85 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 2.71 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 4.96 | MC |
| SRR5110445 | panicle | Dusk | 2.90 | MC |
| SRR5110446 | panicle | Dusk | 3.71 | MC |
| SRR5110447 | panicle | Dusk | 2.90 | MC |
| SRR5110448 | panicle | Dusk | 3.55 | MC |
| SRR5110449 | panicle | Dawn + 14h | 3.78 | MC |
| SRR5110450 | panicle | Dawn + 14h | 3.45 | MC |
| SRR5110451 | panicle | Dawn + 14h | 2.89 | MC |
| SRR5110452 | panicle | Dawn + 14h | 2.87 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 2.80 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.97 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 3.61 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 2.81 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.07 | MC |
| SRR5110459 | panicle | Dawn + 21h | 3.25 | MC |
| SRR5110460 | panicle | Dawn + 21h | 4.15 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.71 | MC |
| SRR5126147 | root | "mock,1_day" | 3.47 | MC |
| SRR5126148 | root | "mock,1_day" | 2.88 | MC |
| SRR5126149 | root | "mock,1_day" | 3.60 | MC |
| SRR5126153 | root | "mock,7_days" | 3.98 | MC |
| SRR5126165 | root | "mock,14_days" | 3.44 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.55 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.83 | MC |
| SRR4947484 | root | Al | 4.20 | MC |
| SRR4947500 | root | Al | 5.38 | MC |
| SRR4947507 | root | Al | 4.36 | MC |
| SRR6502103 | root | 100 mM NaCl | 4.56 | MC |
| SRR6502105 | root | 100 mM NaCl | 4.06 | MC |
| SRR6502108 | root | control | 4.71 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.72 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.57 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.58 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.45 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.52 | MC |
| SRR1740433 | root_elongation_zone | wt | 2.01 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.04 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.40 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.87 | MC |
| SRR6441554 | seedling | wild_type | 2.00 | MC |
| SRR6441555 | seedling | wild_type | 2.81 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 1.03 | MC |
| SRR1944583 | seedling | no_treatment | 1.24 | MC |
| SRR358791 | seedling | wt | 3.12 | MC |
| SRR358792 | seedling | wt | 1.89 | MC |
| SRR358793 | seedling | wt | 0.70 | MC |
| SRR358794 | seedling | wt | 0.62 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.19 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.75 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.15 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.21 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.85 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.43 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.46 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.57 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.29 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.68 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.40 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.36 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.28 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.38 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.79 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.12 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.96 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.61 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.50 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.49 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.85 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.18 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.19 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.55 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.55 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.82 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.38 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 7.33 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 13.10 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 4.19 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.51 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 2.17 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 5.98 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 3.07 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 2.73 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 2.04 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.53 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 4.24 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 4.36 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 2.94 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 2.83 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 3.51 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.99 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.34 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.26 | MC |