| SRR4457265 | 2nd_leaf | DAH44 | 3.95 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 5.69 | MC |
| SRR3745125 | anther | wt | 2.43 | MC |
| SRR3745126 | anther | wt | 1.60 | MC |
| SRR3745127 | anther | wt | 1.54 | MC |
| SRR358795 | callus | wt | 5.73 | MC |
| SRR358796 | callus | wt | 4.91 | MC |
| SRR358797 | callus | wt | 6.86 | MC |
| SRR358798 | callus | wt | 6.96 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 4.55 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.09 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.46 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 2.22 | MC |
| SRR7265400 | coleoptile | 2dA | 2.62 | MC |
| SRR7265401 | coleoptile | 2dA | 2.62 | MC |
| SRR7265402 | coleoptile | 2dA | 2.11 | MC |
| SRR7265403 | coleoptile | 2dN | 2.23 | MC |
| SRR7265404 | coleoptile | 2dN | 1.66 | MC |
| SRR7265405 | coleoptile | 2dN | 1.84 | MC |
| SRR7265406 | coleoptile | 3dA | 2.22 | MC |
| SRR7265407 | coleoptile | 3dA | 1.80 | MC |
| SRR7265408 | coleoptile | 3dA | 0.91 | MC |
| SRR7265409 | coleoptile | 3dN | 1.69 | MC |
| SRR7265410 | coleoptile | 3dN | 1.90 | MC |
| SRR7265411 | coleoptile | 3dN | 1.20 | MC |
| SRR7265414 | coleoptile | 4dA | 3.99 | MC |
| SRR7265415 | coleoptile | 4dN | 1.52 | MC |
| SRR7265416 | coleoptile | 4dN | 1.06 | MC |
| SRR7265417 | coleoptile | 4dN | 1.11 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 3.72 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.56 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 2.30 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.04 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 3.43 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 2.82 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 2.90 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.17 | MC |
| SRR7265382 | embryo | 3hA | 4.27 | MC |
| SRR7265383 | embryo | 3hA | 4.11 | MC |
| SRR7265385 | embryo | 3hN | 3.92 | MC |
| SRR7265386 | embryo | 3hN | 2.86 | MC |
| SRR7265387 | embryo | 3hN | 2.39 | MC |
| SRR7265388 | embryo | 12hA | 3.72 | MC |
| SRR7265389 | embryo | 12hA | 3.72 | MC |
| SRR7265390 | embryo | 12hA | 3.23 | MC |
| SRR7265391 | embryo | 12hN | 1.69 | MC |
| SRR7265392 | embryo | 12hN | 2.58 | MC |
| SRR7265393 | embryo | 12hN | 1.29 | MC |
| SRR7265394 | embryo | 24hA | 1.29 | MC |
| SRR7265395 | embryo | 24hA | 1.91 | MC |
| SRR7265396 | embryo | 24hA | 2.30 | MC |
| SRR7265397 | embryo | 24hN | 1.98 | MC |
| SRR7265398 | embryo | 24hN | 2.08 | MC |
| SRR7265399 | embryo | 24hN | 1.10 | MC |
| SRR2338866 | endosprem | control | 4.12 | MC |
| SRR2338868 | endosprem | high_temperature | 2.61 | MC |
| SRR976168 | flag_leaf | wild_type | 3.23 | MC |
| SRR4457240 | flag_leaf | DAH28 | 3.05 | MC |
| SRR4457241 | flag_leaf | DAH28 | 2.89 | MC |
| SRR4457246 | flag_leaf | DAH44 | 4.34 | MC |
| SRR4457247 | flag_leaf | DAH44 | 4.80 | MC |
| SRR4457248 | flag_leaf | DAH44 | 6.13 | MC |
| SRR8060835 | leaf | wild_type | 2.78 | MC |
| SRR8060837 | leaf | wild_type | 2.43 | MC |
| SRR8240824 | leaf | wild_type | 1.00 | MC |
| SRR8240825 | leaf | wild_type | 1.26 | MC |
| SRR8240826 | leaf | wild_type | 1.23 | MC |
| SRR8240818 | leaf | wild_type | 0.68 | MC |
| SRR8240819 | leaf | wild_type | 1.06 | MC |
| SRR8240820 | leaf | wild_type | 1.38 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 3.74 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 3.29 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 3.92 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.86 | MC |
| SRR6417969 | leaf | H2O_control | 3.23 | MC |
| SRR8611900 | leaf | Non-inoculated | 3.62 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.95 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 2.46 | MC |
| SRR6168973 | leaf | none (control) | 3.77 | MC |
| SRR6168974 | leaf | none (control) | 2.23 | MC |
| SRR6168975 | leaf | none (control) | 3.88 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 4.48 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 3.59 | MC |
| SRR4947496 | root | control | 0.72 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.04 | MC |
| SRR1633182 | panicle | WT | 1.12 | MC |
| SRR1633185 | panicle | WT | 1.97 | MC |
| SRR5126147 | root | "mock,1_day" | 1.99 | MC |
| SRR5126148 | root | "mock,1_day" | 1.52 | MC |
| SRR5126149 | root | "mock,1_day" | 2.03 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.39 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 4.59 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.68 | MC |
| SRR5126153 | root | "mock,7_days" | 2.40 | MC |
| SRR5126155 | root | "mock,7_days" | 2.88 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 3.17 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 5.00 | MC |
| SRR5126165 | root | "mock,14_days" | 4.24 | MC |
| SRR5126167 | root | "mock,14_days" | 3.62 | MC |
| SRR5126169 | root | "mock,14_days" | 4.52 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 4.05 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 5.16 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.89 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.86 | MC |
| SRR1213694 | root | wt | 2.74 | MC |
| SRR4947480 | root | control | 0.59 | MC |
| SRR4947481 | root | control | 2.27 | MC |
| SRR4947484 | root | Al | 0.62 | MC |
| SRR4947485 | root | Al | 0.86 | MC |
| SRR4947488 | root | control | 0.57 | MC |
| SRR4947489 | root | control | 1.17 | MC |
| SRR4947492 | root | Al | 0.73 | MC |
| SRR4947493 | root | Al | 0.60 | MC |
| SRR4947497 | root | control | 1.10 | MC |
| SRR4947500 | root | Al | 0.98 | MC |
| SRR4947501 | root | Al | 0.96 | MC |
| SRR4947504 | root | control | 1.11 | MC |
| SRR4947505 | root | control | 0.64 | MC |
| SRR4947508 | root | Al | 0.54 | MC |
| SRR4947509 | root | Al | 0.77 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.74 | MC |
| SRR6502092 | root | 100 mM NaCl | 3.29 | MC |
| SRR6502093 | root | 100 mM NaCl | 2.48 | MC |
| SRR6502094 | root | control | 0.71 | MC |
| SRR6502095 | root | control | 1.01 | MC |
| SRR6502096 | root | control | 0.66 | MC |
| SRR6502103 | root | 100 mM NaCl | 2.47 | MC |
| SRR6502104 | root | 100 mM NaCl | 4.64 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.65 | MC |
| SRR6502106 | root | control | 2.37 | MC |
| SRR6502107 | root | control | 0.86 | MC |
| SRR6502108 | root | control | 1.23 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.48 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.30 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.39 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.55 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.29 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.41 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.45 | MC |
| SRR6441555 | seedling | wild_type | 2.45 | MC |
| SRR2154085 | seedling | wt | 4.15 | MC |
| SRR2154087 | seedling | wt | 3.65 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 1.50 | MC |
| SRR358792 | seedling | wt | 6.75 | MC |
| SRR358793 | seedling | wt | 4.04 | MC |
| SRR358794 | seedling | wt | 5.14 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.59 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.72 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.84 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.72 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 5.90 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.58 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.91 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.13 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.12 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.95 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.69 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.84 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 2.23 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.31 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.91 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.81 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 2.97 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 2.34 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 2.41 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.85 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.50 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.69 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 4.79 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 4.62 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 6.87 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 4.61 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 6.59 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 7.65 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 3.65 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 5.58 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 4.55 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 6.22 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 6.54 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 6.55 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 5.06 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 5.20 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 5.61 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 7.86 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 5.75 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 4.64 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 5.95 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 7.74 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 3.60 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 5.14 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 3.36 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 5.42 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 3.72 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 3.30 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 3.18 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 3.24 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 3.03 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.06 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 3.09 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 4.18 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 3.80 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 3.70 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.51 | MC |