| SRR3745125 | anther | wt | 2.46 | MC |
| SRR3745126 | anther | wt | 2.56 | MC |
| SRR3745127 | anther | wt | 1.87 | MC |
| SRR358795 | callus | wt | 6.90 | MC |
| SRR358796 | callus | wt | 6.85 | MC |
| SRR358797 | callus | wt | 6.93 | MC |
| SRR358798 | callus | wt | 6.97 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.62 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.48 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.58 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.94 | MC |
| SRR7265400 | coleoptile | 2dA | 2.39 | MC |
| SRR7265401 | coleoptile | 2dA | 1.95 | MC |
| SRR7265402 | coleoptile | 2dA | 2.16 | MC |
| SRR7265403 | coleoptile | 2dN | 2.39 | MC |
| SRR7265404 | coleoptile | 2dN | 2.74 | MC |
| SRR7265405 | coleoptile | 2dN | 2.63 | MC |
| SRR7265406 | coleoptile | 3dA | 0.83 | MC |
| SRR7265407 | coleoptile | 3dA | 0.82 | MC |
| SRR7265408 | coleoptile | 3dA | 0.55 | MC |
| SRR7265409 | coleoptile | 3dN | 2.72 | MC |
| SRR7265410 | coleoptile | 3dN | 2.91 | MC |
| SRR7265411 | coleoptile | 3dN | 2.59 | MC |
| SRR7265413 | coleoptile | 4dA | 4.34 | MC |
| SRR7265414 | coleoptile | 4dA | 3.21 | MC |
| SRR7265415 | coleoptile | 4dN | 3.11 | MC |
| SRR7265416 | coleoptile | 4dN | 2.55 | MC |
| SRR7265417 | coleoptile | 4dN | 3.07 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 2.00 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.91 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.65 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.74 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.19 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 3.09 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.43 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.71 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.07 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.25 | MC |
| SRR7265376 | embryo | 1hA | 0.33 | MC |
| SRR7265377 | embryo | 1hA | 0.70 | MC |
| SRR7265378 | embryo | 1hA | 0.37 | MC |
| SRR7265379 | embryo | 1hN | 0.62 | MC |
| SRR7265380 | embryo | 1hN | 0.53 | MC |
| SRR7265381 | embryo | 1hN | 0.41 | MC |
| SRR7265382 | embryo | 3hA | 0.52 | MC |
| SRR7265383 | embryo | 3hA | 0.72 | MC |
| SRR7265384 | embryo | 3hA | 0.62 | MC |
| SRR7265385 | embryo | 3hN | 0.78 | MC |
| SRR7265386 | embryo | 3hN | 0.55 | MC |
| SRR7265387 | embryo | 3hN | 0.68 | MC |
| SRR7265388 | embryo | 12hA | 2.24 | MC |
| SRR7265389 | embryo | 12hA | 2.49 | MC |
| SRR7265390 | embryo | 12hA | 2.29 | MC |
| SRR7265391 | embryo | 12hN | 1.66 | MC |
| SRR7265392 | embryo | 12hN | 1.52 | MC |
| SRR7265393 | embryo | 12hN | 1.59 | MC |
| SRR7265394 | embryo | 24hA | 4.80 | MC |
| SRR7265395 | embryo | 24hA | 3.03 | MC |
| SRR7265396 | embryo | 24hA | 3.18 | MC |
| SRR7265397 | embryo | 24hN | 2.82 | MC |
| SRR7265398 | embryo | 24hN | 2.92 | MC |
| SRR7265399 | embryo | 24hN | 2.25 | MC |
| SRR2338866 | endosprem | control | 2.13 | MC |
| SRR2338867 | endosprem | control | 0.67 | MC |
| SRR2338868 | endosprem | high_temperature | 1.42 | MC |
| SRR2338869 | endosprem | high_temperature | 1.75 | MC |
| SRR976168 | flag_leaf | wild_type | 0.81 | MC |
| SRR8240824 | leaf | wild_type | 1.30 | MC |
| SRR8240825 | leaf | wild_type | 1.10 | MC |
| SRR8240826 | leaf | wild_type | 1.79 | MC |
| SRR8240818 | leaf | wild_type | 1.17 | MC |
| SRR8240819 | leaf | wild_type | 1.44 | MC |
| SRR8240820 | leaf | wild_type | 2.32 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.13 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.61 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.26 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.04 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.65 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.68 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.87 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.89 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.36 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.40 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.30 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 5.63 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.43 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.41 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.84 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.55 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 6.71 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.83 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.73 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.68 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.62 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.32 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.60 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.97 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.71 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.51 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 3.06 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 3.17 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 2.70 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 4.51 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.58 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.75 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 4.51 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.58 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.75 | MC |
| SRR1761528 | leaf | drought | 4.51 | MC |
| SRR1761530 | leaf | control | 1.58 | MC |
| SRR1761531 | leaf | control | 1.75 | MC |
| SRR504365 | leaf | wt | 3.32 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.89 | MC |
| SRR6417968 | leaf | H2O_control | 3.52 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 2.23 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.77 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 4.08 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 4.01 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.87 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 2.36 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.52 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.80 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.94 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.94 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 2.27 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.62 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 2.95 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 3.35 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.90 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.32 | MC |
| SRR1213692 | leaf | wt | 2.73 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 3.96 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 4.23 | MC |
| SRR6502088 | leaf | control | 3.61 | MC |
| SRR6502089 | leaf | control | 3.44 | MC |
| SRR6502090 | leaf | control | 3.39 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 3.70 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 3.09 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 2.94 | MC |
| SRR6502100 | leaf | control | 3.35 | MC |
| SRR6502101 | leaf | control | 2.21 | MC |
| SRR6502102 | leaf | control | 2.76 | MC |
| SRR5856928 | leaf | control | 0.23 | MC |
| SRR5856933 | leaf | control | 0.55 | MC |
| SRR5856934 | leaf | control | 0.63 | MC |
| SRR5856936 | leaf | salt | 0.31 | MC |
| SRR5856937 | leaf | salt | 0.29 | MC |
| SRR5856938 | leaf | salt | 0.26 | MC |
| SRR6168973 | leaf | none (control) | 0.75 | MC |
| SRR6168974 | leaf | none (control) | 1.13 | MC |
| SRR6168975 | leaf | none (control) | 1.09 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.08 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.65 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.06 | MC |
| SRR6168979 | leaf | none (control) | 0.78 | MC |
| SRR6168980 | leaf | none (control) | 0.59 | MC |
| SRR6168981 | leaf | none (control) | 0.97 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.70 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 2.17 | MC |
| SRR8582889 | panicle | AM | 0.36 | MC |
| SRR8582890 | panicle | AM | 0.76 | MC |
| SRR8582891 | panicle | PM | 2.19 | MC |
| SRR8582892 | panicle | PM | 2.49 | MC |
| SRR8582893 | panicle | PM | 2.62 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.77 | MC |
| SRR1633182 | panicle | WT | 0.94 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 3.86 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 4.31 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 3.22 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 3.50 | MC |
| SRR5126147 | root | "mock,1_day" | 4.23 | MC |
| SRR5126148 | root | "mock,1_day" | 2.54 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.98 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 4.83 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 3.79 | MC |
| SRR4947481 | root | control | 4.89 | MC |
| SRR4947484 | root | Al | 4.17 | MC |
| SRR4947489 | root | control | 4.56 | MC |
| SRR4947497 | root | control | 5.65 | MC |
| SRR4947501 | root | Al | 5.79 | MC |
| SRR4947509 | root | Al | 5.21 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.46 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.58 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.53 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.87 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.72 | MC |
| SRR1740428 | root_meristematic_zone | wt | 0.52 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.16 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.13 | MC |
| SRR6441554 | seedling | wild_type | 1.13 | MC |
| SRR6441555 | seedling | wild_type | 1.20 | MC |
| SRR2154086 | seedling | wt | 2.41 | MC |
| SRR2154083 | seedling | wt | 0.95 | MC |
| SRR2154084 | seedling | wt | 0.78 | MC |
| SRR2154085 | seedling | wt | 3.23 | MC |
| SRR2154087 | seedling | wt | 2.48 | MC |
| SRR3098741 | seedling | wt | 1.65 | MC |
| SRR3098742 | seedling | wt | 0.79 | MC |
| SRR3098743 | seedling | wt | 0.77 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.32 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.53 | MC |
| SRR1944583 | seedling | no_treatment | 0.56 | MC |
| SRR358791 | seedling | wt | 3.31 | MC |
| SRR358792 | seedling | wt | 2.57 | MC |
| SRR358793 | seedling | wt | 1.57 | MC |
| SRR358794 | seedling | wt | 1.09 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.45 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.18 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.54 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.97 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.15 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.07 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.72 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.11 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.22 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.06 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.06 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.13 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.36 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.28 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.85 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 2.14 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.41 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.53 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.31 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.55 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.37 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.34 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.61 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.39 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.97 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.32 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.25 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.03 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.47 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.78 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.67 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.51 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.16 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.84 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.04 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.72 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.39 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.53 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.62 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.27 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.56 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.91 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.88 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 7.13 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 7.40 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 6.67 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 7.18 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 6.92 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 6.95 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 7.16 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 7.37 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 8.25 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 7.20 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 8.60 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 8.14 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 7.43 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 2.40 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 3.97 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 4.36 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 4.42 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 4.11 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 3.25 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 2.76 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.96 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.13 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.45 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.15 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.20 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.55 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.35 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.51 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.58 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.46 | MC |