| SRR358798 | callus | wt | 1.03 | MC |
| SRR5560727 | caryopsis | wild_type | 0.93 | MC |
| SRR5560728 | caryopsis | wild_type | 1.95 | MC |
| SRR5560729 | caryopsis | wild_type | 0.93 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.64 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.83 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.77 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.43 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.68 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 3.00 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.39 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.35 | MC |
| SRR7265377 | embryo | 1hA | 0.35 | MC |
| SRR7265378 | embryo | 1hA | 0.48 | MC |
| SRR7265379 | embryo | 1hN | 0.73 | MC |
| SRR7265380 | embryo | 1hN | 0.58 | MC |
| SRR7265381 | embryo | 1hN | 0.43 | MC |
| SRR7265386 | embryo | 3hN | 0.32 | MC |
| SRR7265387 | embryo | 3hN | 0.36 | MC |
| SRR2338867 | endosprem | control | 0.64 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.33 | MC |
| SRR1213691 | flower | wt | 0.33 | MC |
| SRR8240826 | leaf | wild_type | 0.29 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.41 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.43 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.53 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.50 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.16 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.55 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.55 | MC |
| SRR1761529 | leaf | drought | 0.55 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.86 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.61 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.52 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.50 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.64 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.99 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.32 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.42 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.60 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.30 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.27 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.51 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.75 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.64 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.51 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.37 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.09 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.37 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.26 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 3.35 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 5.37 | MC |
| SRR5126147 | root | "mock,1_day" | 0.56 | MC |
| SRR5126148 | root | "mock,1_day" | 0.58 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.40 | MC |
| SRR5126153 | root | "mock,7_days" | 0.39 | MC |
| SRR5126157 | root | "mock,7_days" | 0.62 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.46 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.54 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.40 | MC |
| SRR5126167 | root | "mock,14_days" | 0.35 | MC |
| SRR5126169 | root | "mock,14_days" | 0.36 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.41 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.61 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.90 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.46 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.51 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.69 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.50 | MC |
| SRR6502106 | root | control | 1.08 | MC |
| SRR6502107 | root | control | 1.04 | MC |
| SRR6502108 | root | control | 1.38 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.48 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.63 | MC |
| SRR1740428 | root_meristematic_zone | wt | 0.79 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.52 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.59 | MC |
| SRR3098741 | seedling | wt | 0.25 | MC |
| SRR3098742 | seedling | wt | 0.18 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.46 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.70 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.58 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.50 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.17 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.40 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.21 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.55 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.35 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.45 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.41 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.47 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.32 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.64 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.51 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.90 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.43 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.43 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 6.53 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 4.75 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.94 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 5.21 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 3.04 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 4.61 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 7.40 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 3.81 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 4.82 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 6.23 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 5.82 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 7.09 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 4.74 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 4.64 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 7.11 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 6.27 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 6.95 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 6.05 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 5.86 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 7.08 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 7.62 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 6.37 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 8.01 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.20 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 3.33 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.72 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.56 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.75 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.88 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.16 | MC |