| SRR4947495 | root | control | 4.74 | MC |
| SRR7265404 | coleoptile | 2dN | 0.32 | MC |
| SRR7265405 | coleoptile | 2dN | 0.52 | MC |
| SRR7265406 | coleoptile | 3dA | 0.67 | MC |
| SRR7265407 | coleoptile | 3dA | 0.79 | MC |
| SRR7265408 | coleoptile | 3dA | 0.79 | MC |
| SRR7265413 | coleoptile | 4dA | 1.87 | MC |
| SRR7265414 | coleoptile | 4dA | 0.59 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.08 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 3.74 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.95 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.65 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.75 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.30 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 3.68 | MC |
| SRR7265388 | embryo | 12hA | 2.58 | MC |
| SRR7265389 | embryo | 12hA | 1.70 | MC |
| SRR7265390 | embryo | 12hA | 3.11 | MC |
| SRR7265394 | embryo | 24hA | 3.05 | MC |
| SRR7265395 | embryo | 24hA | 2.11 | MC |
| SRR7265396 | embryo | 24hA | 2.86 | MC |
| SRR7265397 | embryo | 24hN | 0.65 | MC |
| SRR7265399 | embryo | 24hN | 0.63 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.46 | MC |
| SRR8060836 | leaf | wild_type | 0.60 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.62 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.69 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.40 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.74 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.55 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.65 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.57 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.54 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.43 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.55 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 1.01 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.78 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.35 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.38 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.41 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.42 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.67 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.88 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 2.09 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 3.22 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 2.09 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 3.22 | MC |
| SRR1761528 | leaf | drought | 2.09 | MC |
| SRR1761529 | leaf | drought | 3.22 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.70 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.09 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.93 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.80 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.53 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.00 | MC |
| SRR5856927 | leaf | control | 1.80 | MC |
| SRR5856930 | leaf | salt | 1.09 | MC |
| SRR5856931 | leaf | salt | 0.81 | MC |
| SRR5856932 | leaf | salt | 1.53 | MC |
| SRR5856933 | leaf | control | 0.83 | MC |
| SRR5856934 | leaf | control | 1.13 | MC |
| SRR5856935 | leaf | control | 1.58 | MC |
| SRR5856936 | leaf | salt | 0.14 | MC |
| SRR5856938 | leaf | salt | 0.25 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.55 | MC |
| SRR6168973 | leaf | none (control) | 2.28 | MC |
| SRR6168974 | leaf | none (control) | 4.73 | MC |
| SRR6168979 | leaf | none (control) | 0.20 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.42 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 2.02 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 2.86 | MC |
| SRR5110429 | panicle | Dawn | 1.99 | MC |
| SRR5110430 | panicle | Dawn | 1.25 | MC |
| SRR5110431 | panicle | Dawn | 1.41 | MC |
| SRR5110432 | panicle | Dawn | 0.87 | MC |
| SRR4947496 | root | control | 0.74 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.04 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.65 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.80 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.86 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.70 | MC |
| SRR5110439 | panicle | Dawn + 7h | 0.83 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.04 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.59 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.87 | MC |
| SRR5110446 | panicle | Dusk | 1.51 | MC |
| SRR5110447 | panicle | Dusk | 1.52 | MC |
| SRR5110448 | panicle | Dusk | 2.13 | MC |
| SRR5110449 | panicle | Dawn + 14h | 0.63 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.51 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.84 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.15 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.06 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.55 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 2.06 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.58 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.63 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.54 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.03 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.73 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.78 | MC |
| SRR5126149 | root | "mock,1_day" | 3.64 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 3.82 | MC |
| SRR5126157 | root | "mock,7_days" | 2.15 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.49 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.21 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 3.76 | MC |
| SRR5126167 | root | "mock,14_days" | 3.77 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.89 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.16 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.54 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.87 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.41 | MC |
| SRR1213694 | root | wt | 0.32 | MC |
| SRR4947478 | root | control | 4.75 | MC |
| SRR4947479 | root | control | 2.58 | MC |
| SRR4947480 | root | control | 1.61 | MC |
| SRR4947481 | root | control | 1.59 | MC |
| SRR4947482 | root | Al | 2.14 | MC |
| SRR4947483 | root | Al | 4.00 | MC |
| SRR4947484 | root | Al | 1.69 | MC |
| SRR4947485 | root | Al | 1.07 | MC |
| SRR4947487 | root | control | 4.09 | MC |
| SRR4947488 | root | control | 0.91 | MC |
| SRR4947489 | root | control | 0.97 | MC |
| SRR4947490 | root | Al | 3.64 | MC |
| SRR4947492 | root | Al | 1.61 | MC |
| SRR4947493 | root | Al | 1.02 | MC |
| SRR4947494 | root | control | 4.38 | MC |
| SRR4947497 | root | control | 1.81 | MC |
| SRR4947499 | root | Al | 4.68 | MC |
| SRR4947500 | root | Al | 1.04 | MC |
| SRR4947501 | root | Al | 2.01 | MC |
| SRR4947502 | root | control | 3.94 | MC |
| SRR4947503 | root | control | 2.95 | MC |
| SRR4947504 | root | control | 0.80 | MC |
| SRR4947505 | root | control | 0.74 | MC |
| SRR4947506 | root | Al | 2.95 | MC |
| SRR4947508 | root | Al | 1.22 | MC |
| SRR4947509 | root | Al | 2.40 | MC |
| SRR6502091 | root | 100 mM NaCl | 4.75 | MC |
| SRR6502092 | root | 100 mM NaCl | 3.36 | MC |
| SRR6502093 | root | 100 mM NaCl | 3.35 | MC |
| SRR6502094 | root | control | 4.80 | MC |
| SRR6502096 | root | control | 3.38 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.57 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.15 | MC |
| SRR6502105 | root | 100 mM NaCl | 2.11 | MC |
| SRR6502106 | root | control | 2.60 | MC |
| SRR6502107 | root | control | 1.88 | MC |
| SRR6502108 | root | control | 2.81 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.62 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.13 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.14 | MC |
| SRR1740431 | root_elongation_zone | wt | 2.39 | MC |
| SRR1740428 | root_meristematic_zone | wt | 3.71 | MC |
| SRR6441554 | seedling | wild_type | 0.41 | MC |
| SRR2154082 | seedling | wt | 3.08 | MC |
| SRR2154083 | seedling | wt | 3.52 | MC |
| SRR3098742 | seedling | wt | 0.30 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.19 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.36 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 3.41 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.11 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.38 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.99 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.31 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.50 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.71 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.64 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.98 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.24 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.38 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.28 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.26 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.41 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.51 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.07 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.00 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.19 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.51 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.57 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 13.27 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 2.52 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 4.08 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 6.56 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 6.17 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 3.28 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.96 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.43 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 3.35 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.65 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 4.14 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.51 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 2.69 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.48 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.30 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.02 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.74 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.62 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.45 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.87 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.97 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.42 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.37 | MC |