| SRR4457250 | 2nd_leaf | DAH4 | 0.54 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.36 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.44 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.44 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.65 | MC |
| SRR358798 | callus | wt | 3.47 | MC |
| SRR5560727 | caryopsis | wild_type | 3.22 | MC |
| SRR5560728 | caryopsis | wild_type | 1.56 | MC |
| SRR5560729 | caryopsis | wild_type | 1.22 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.79 | MC |
| SRR7265400 | coleoptile | 2dA | 0.33 | MC |
| SRR7265401 | coleoptile | 2dA | 0.44 | MC |
| SRR7265403 | coleoptile | 2dN | 1.13 | MC |
| SRR7265405 | coleoptile | 2dN | 0.78 | MC |
| SRR7265406 | coleoptile | 3dA | 0.71 | MC |
| SRR7265407 | coleoptile | 3dA | 0.74 | MC |
| SRR7265408 | coleoptile | 3dA | 0.67 | MC |
| SRR7265409 | coleoptile | 3dN | 1.30 | MC |
| SRR7265410 | coleoptile | 3dN | 0.56 | MC |
| SRR7265411 | coleoptile | 3dN | 0.91 | MC |
| SRR7265412 | coleoptile | 4dA | 0.60 | MC |
| SRR7265414 | coleoptile | 4dA | 0.64 | MC |
| SRR7265415 | coleoptile | 4dN | 1.33 | MC |
| SRR7265416 | coleoptile | 4dN | 2.33 | MC |
| SRR7265417 | coleoptile | 4dN | 1.83 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.55 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.40 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.29 | MC |
| SRR7265378 | embryo | 1hA | 0.25 | MC |
| SRR7265382 | embryo | 3hA | 0.55 | MC |
| SRR7265384 | embryo | 3hA | 0.35 | MC |
| SRR7265386 | embryo | 3hN | 0.27 | MC |
| SRR7265388 | embryo | 12hA | 0.79 | MC |
| SRR7265390 | embryo | 12hA | 0.73 | MC |
| SRR7265391 | embryo | 12hN | 0.84 | MC |
| SRR7265392 | embryo | 12hN | 1.64 | MC |
| SRR7265393 | embryo | 12hN | 1.10 | MC |
| SRR7265394 | embryo | 24hA | 1.13 | MC |
| SRR7265396 | embryo | 24hA | 0.79 | MC |
| SRR7265397 | embryo | 24hN | 0.71 | MC |
| SRR7265399 | embryo | 24hN | 0.79 | MC |
| SRR2338867 | endosprem | control | 0.40 | MC |
| SRR2338869 | endosprem | high_temperature | 2.06 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.25 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.19 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.22 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.33 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.41 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.61 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.60 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.46 | MC |
| SRR1213691 | flower | wt | 0.38 | MC |
| SRR8240824 | leaf | wild_type | 0.25 | MC |
| SRR8240819 | leaf | wild_type | 0.50 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.83 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.83 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.79 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.74 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.69 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.70 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.78 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.48 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.69 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.85 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.17 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.46 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.69 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.22 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.61 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.37 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.56 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.68 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.97 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.64 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.80 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.48 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.78 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.55 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.75 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.58 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.30 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.58 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.30 | MC |
| SRR1761528 | leaf | drought | 0.58 | MC |
| SRR1761529 | leaf | drought | 1.30 | MC |
| SRR504365 | leaf | wt | 0.42 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.44 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.91 | MC |
| SRR6417967 | leaf | H2O_control | 0.72 | MC |
| SRR6417968 | leaf | H2O_control | 0.94 | MC |
| SRR6417969 | leaf | H2O_control | 0.75 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.27 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.78 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.82 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.38 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.11 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.01 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.57 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.41 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.45 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.22 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.39 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 3.01 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 2.24 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.06 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.76 | MC |
| SRR1213692 | leaf | wt | 1.47 | MC |
| SRR1213693 | leaf | wt | 0.51 | MC |
| SRR6168973 | leaf | none (control) | 3.16 | MC |
| SRR6168975 | leaf | none (control) | 2.39 | MC |
| SRR6168979 | leaf | none (control) | 1.37 | MC |
| SRR6168980 | leaf | none (control) | 1.28 | MC |
| SRR6168981 | leaf | none (control) | 1.12 | MC |
| SRR8582888 | panicle | AM | 0.44 | MC |
| SRR8582889 | panicle | AM | 0.50 | MC |
| SRR8582890 | panicle | AM | 0.85 | MC |
| SRR8582891 | panicle | PM | 1.18 | MC |
| SRR8582892 | panicle | PM | 1.33 | MC |
| SRR8582893 | panicle | PM | 0.70 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.71 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.51 | MC |
| SRR1633182 | panicle | WT | 0.96 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.05 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.83 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.19 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 2.70 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.68 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.38 | MC |
| SRR5126147 | root | "mock,1_day" | 1.77 | MC |
| SRR5126148 | root | "mock,1_day" | 2.00 | MC |
| SRR5126149 | root | "mock,1_day" | 0.72 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.01 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.87 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.12 | MC |
| SRR5126153 | root | "mock,7_days" | 1.84 | MC |
| SRR5126155 | root | "mock,7_days" | 3.38 | MC |
| SRR5126157 | root | "mock,7_days" | 2.03 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 4.69 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.88 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 3.24 | MC |
| SRR5126165 | root | "mock,14_days" | 1.65 | MC |
| SRR5126167 | root | "mock,14_days" | 1.54 | MC |
| SRR5126169 | root | "mock,14_days" | 3.43 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 3.71 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 3.69 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.99 | MC |
| SRR1213694 | root | wt | 1.20 | MC |
| SRR1213695 | root | wt | 0.55 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.67 | MC |
| SRR6502094 | root | control | 0.42 | MC |
| SRR6502096 | root | control | 0.44 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.42 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.43 | MC |
| SRR1740428 | root_meristematic_zone | wt | 0.79 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.71 | MC |
| SRR6441554 | seedling | wild_type | 2.52 | MC |
| SRR2154086 | seedling | wt | 1.43 | MC |
| SRR2154085 | seedling | wt | 0.81 | MC |
| SRR2154087 | seedling | wt | 0.33 | MC |
| SRR3098741 | seedling | wt | 1.09 | MC |
| SRR3098742 | seedling | wt | 1.14 | MC |
| SRR3098743 | seedling | wt | 0.98 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.54 | MC |
| SRR1944583 | seedling | no_treatment | 1.96 | MC |
| SRR358791 | seedling | wt | 0.98 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.12 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.72 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.96 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 11.72 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.44 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.07 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.13 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.01 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.18 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.67 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.44 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 2.88 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 2.97 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 2.10 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 2.11 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.93 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.18 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 2.61 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.09 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.04 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.68 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.59 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.63 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.61 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.38 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.44 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.29 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.36 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.57 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.79 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.71 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 2.02 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.03 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 0.89 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.92 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.94 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.85 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 0.72 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 2.31 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 2.73 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.97 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 2.47 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.11 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.76 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.66 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.50 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.62 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.73 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.59 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.46 | MC |