| SRR4457265 | 2nd_leaf | DAH44 | 0.42 | MC |
| SRR358797 | callus | wt | 2.44 | MC |
| SRR6320498 | carpel | wt | 2.08 | MC |
| SRR5560727 | caryopsis | wild_type | 1.17 | MC |
| SRR5560728 | caryopsis | wild_type | 1.02 | MC |
| SRR5560729 | caryopsis | wild_type | 1.39 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.40 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.49 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.09 | MC |
| SRR7265409 | coleoptile | 3dN | 0.58 | MC |
| SRR7265411 | coleoptile | 3dN | 0.35 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.19 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.39 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.56 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.37 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 2.10 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.81 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.64 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.43 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.44 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.64 | MC |
| SRR7265388 | embryo | 12hA | 0.87 | MC |
| SRR7265389 | embryo | 12hA | 0.55 | MC |
| SRR7265390 | embryo | 12hA | 0.75 | MC |
| SRR7265391 | embryo | 12hN | 0.91 | MC |
| SRR7265392 | embryo | 12hN | 0.72 | MC |
| SRR7265393 | embryo | 12hN | 0.70 | MC |
| SRR7265395 | embryo | 24hA | 0.84 | MC |
| SRR2338866 | endosprem | control | 2.44 | MC |
| SRR2338867 | endosprem | control | 0.87 | MC |
| SRR2338869 | endosprem | high_temperature | 1.39 | MC |
| SRR976168 | flag_leaf | wild_type | 0.92 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.35 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.13 | MC |
| SRR8060836 | leaf | wild_type | 0.27 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.28 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.41 | MC |
| SRR504365 | leaf | wt | 1.19 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.32 | MC |
| SRR5856927 | leaf | control | 2.21 | MC |
| SRR5856928 | leaf | control | 1.99 | MC |
| SRR5856929 | leaf | control | 1.92 | MC |
| SRR5856930 | leaf | salt | 1.81 | MC |
| SRR5856931 | leaf | salt | 1.37 | MC |
| SRR5856933 | leaf | control | 2.52 | MC |
| SRR5856934 | leaf | control | 2.30 | MC |
| SRR5856935 | leaf | control | 2.36 | MC |
| SRR5856936 | leaf | salt | 1.52 | MC |
| SRR5856937 | leaf | salt | 1.56 | MC |
| SRR5856938 | leaf | salt | 1.88 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 5.59 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 1.94 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 1.73 | MC |
| SRR6168974 | leaf | none (control) | 0.38 | MC |
| SRR6168979 | leaf | none (control) | 0.25 | MC |
| SRR8582891 | panicle | PM | 2.20 | MC |
| SRR8582892 | panicle | PM | 0.61 | MC |
| SRR8582893 | panicle | PM | 0.96 | MC |
| SRR5110432 | panicle | Dawn | 3.84 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 3.25 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 2.85 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.11 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.42 | MC |
| SRR5126147 | root | "mock,1_day" | 1.74 | MC |
| SRR5126148 | root | "mock,1_day" | 1.75 | MC |
| SRR5126149 | root | "mock,1_day" | 1.16 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.36 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.62 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.04 | MC |
| SRR5126155 | root | "mock,7_days" | 1.24 | MC |
| SRR5126157 | root | "mock,7_days" | 1.39 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.46 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.79 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.64 | MC |
| SRR5126165 | root | "mock,14_days" | 0.56 | MC |
| SRR5126167 | root | "mock,14_days" | 0.59 | MC |
| SRR5126169 | root | "mock,14_days" | 0.97 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.68 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.36 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.86 | MC |
| SRR1213694 | root | wt | 0.43 | MC |
| SRR4947481 | root | control | 1.86 | MC |
| SRR4947482 | root | Al | 3.20 | MC |
| SRR4947483 | root | Al | 3.05 | MC |
| SRR4947485 | root | Al | 2.42 | MC |
| SRR4947489 | root | control | 1.09 | MC |
| SRR4947493 | root | Al | 2.09 | MC |
| SRR4947497 | root | control | 1.94 | MC |
| SRR4947501 | root | Al | 3.10 | MC |
| SRR4947503 | root | control | 2.77 | MC |
| SRR4947505 | root | control | 1.78 | MC |
| SRR4947509 | root | Al | 1.42 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.49 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.01 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.70 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.85 | MC |
| SRR6502105 | root | 100 mM NaCl | 2.38 | MC |
| SRR6502106 | root | control | 1.81 | MC |
| SRR6502107 | root | control | 0.88 | MC |
| SRR6502108 | root | control | 2.34 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.81 | MC |
| SRR1740431 | root_elongation_zone | wt | 2.09 | MC |
| SRR1740428 | root_meristematic_zone | wt | 3.80 | MC |
| SRR2154086 | seedling | wt | 1.02 | MC |
| SRR2154087 | seedling | wt | 0.39 | MC |
| SRR3098743 | seedling | wt | 0.19 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.87 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.10 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.57 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.13 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.00 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.45 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.72 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.46 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.41 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.38 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.45 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 3.82 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 2.97 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 2.56 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 2.52 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.21 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.80 | MC |