| SRR3745127 | anther | wt | 0.56 | MC |
| SRR358795 | callus | wt | 1.48 | MC |
| SRR358798 | callus | wt | 1.52 | MC |
| SRR6320473 | carpel | wt | 3.34 | MC |
| SRR6320498 | carpel | wt | 3.68 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.41 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.58 | MC |
| SRR4947495 | root | control | 4.62 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.92 | MC |
| SRR7265400 | coleoptile | 2dA | 2.05 | MC |
| SRR7265401 | coleoptile | 2dA | 2.52 | MC |
| SRR7265404 | coleoptile | 2dN | 0.69 | MC |
| SRR7265406 | coleoptile | 3dA | 2.22 | MC |
| SRR7265407 | coleoptile | 3dA | 2.05 | MC |
| SRR7265408 | coleoptile | 3dA | 0.69 | MC |
| SRR7265409 | coleoptile | 3dN | 4.19 | MC |
| SRR7265410 | coleoptile | 3dN | 0.50 | MC |
| SRR7265411 | coleoptile | 3dN | 0.88 | MC |
| SRR7265412 | coleoptile | 4dA | 0.64 | MC |
| SRR7265413 | coleoptile | 4dA | 3.06 | MC |
| SRR7265414 | coleoptile | 4dA | 2.00 | MC |
| SRR7265415 | coleoptile | 4dN | 3.74 | MC |
| SRR7265416 | coleoptile | 4dN | 3.64 | MC |
| SRR7265417 | coleoptile | 4dN | 3.79 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.86 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 0.60 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.61 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.74 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.55 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.34 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 3.90 | MC |
| SRR7265373 | embryo | dry seed 0 h | 2.38 | MC |
| SRR7265374 | embryo | dry seed 0 h | 3.09 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.78 | MC |
| SRR7265376 | embryo | 1hA | 0.54 | MC |
| SRR7265377 | embryo | 1hA | 0.45 | MC |
| SRR7265378 | embryo | 1hA | 0.39 | MC |
| SRR7265379 | embryo | 1hN | 1.40 | MC |
| SRR7265380 | embryo | 1hN | 0.90 | MC |
| SRR7265381 | embryo | 1hN | 0.29 | MC |
| SRR7265382 | embryo | 3hA | 1.67 | MC |
| SRR7265383 | embryo | 3hA | 0.80 | MC |
| SRR7265384 | embryo | 3hA | 0.41 | MC |
| SRR7265386 | embryo | 3hN | 0.32 | MC |
| SRR7265387 | embryo | 3hN | 0.81 | MC |
| SRR7265389 | embryo | 12hA | 3.17 | MC |
| SRR7265391 | embryo | 12hN | 0.83 | MC |
| SRR7265392 | embryo | 12hN | 3.50 | MC |
| SRR7265393 | embryo | 12hN | 3.60 | MC |
| SRR7265394 | embryo | 24hA | 2.37 | MC |
| SRR7265395 | embryo | 24hA | 0.71 | MC |
| SRR7265396 | embryo | 24hA | 1.28 | MC |
| SRR7265397 | embryo | 24hN | 5.04 | MC |
| SRR7265398 | embryo | 24hN | 0.72 | MC |
| SRR7265399 | embryo | 24hN | 0.89 | MC |
| SRR2338867 | endosprem | control | 0.71 | MC |
| SRR2338869 | endosprem | high_temperature | 0.73 | MC |
| SRR1213691 | flower | wt | 0.32 | MC |
| SRR8060835 | leaf | wild_type | 2.10 | MC |
| SRR8060836 | leaf | wild_type | 1.51 | MC |
| SRR8060837 | leaf | wild_type | 1.26 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.48 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.39 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.45 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.78 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.80 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.15 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.97 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.13 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.01 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.38 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.60 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.51 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.54 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.54 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.73 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.76 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.21 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.63 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.66 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.68 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.36 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.69 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.73 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.24 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.60 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.45 | MC |
| SRR504365 | leaf | wt | 0.49 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.33 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.21 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.33 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.28 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.32 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.24 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.27 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.21 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.92 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 3.23 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 2.73 | MC |
| SRR6502088 | leaf | control | 1.94 | MC |
| SRR6502089 | leaf | control | 0.66 | MC |
| SRR6502090 | leaf | control | 0.71 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.68 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.69 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.47 | MC |
| SRR6502100 | leaf | control | 0.36 | MC |
| SRR6502101 | leaf | control | 0.41 | MC |
| SRR6502102 | leaf | control | 0.50 | MC |
| SRR5856927 | leaf | control | 0.62 | MC |
| SRR5856928 | leaf | control | 0.62 | MC |
| SRR5856929 | leaf | control | 0.42 | MC |
| SRR5856930 | leaf | salt | 0.27 | MC |
| SRR5856931 | leaf | salt | 0.29 | MC |
| SRR5856932 | leaf | salt | 0.21 | MC |
| SRR5856933 | leaf | control | 0.62 | MC |
| SRR5856934 | leaf | control | 0.72 | MC |
| SRR5856935 | leaf | control | 0.54 | MC |
| SRR5856937 | leaf | salt | 0.53 | MC |
| SRR5856938 | leaf | salt | 0.56 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.31 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 1.68 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 1.76 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 3.78 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 0.99 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 2.40 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 2.49 | MC |
| SRR6168975 | leaf | none (control) | 0.36 | MC |
| SRR8582888 | panicle | AM | 0.34 | MC |
| SRR8582889 | panicle | AM | 0.13 | MC |
| SRR8582890 | panicle | AM | 0.54 | MC |
| SRR8582891 | panicle | PM | 1.97 | MC |
| SRR8582892 | panicle | PM | 1.81 | MC |
| SRR5110429 | panicle | Dawn | 2.06 | MC |
| SRR5110430 | panicle | Dawn | 2.95 | MC |
| SRR5110431 | panicle | Dawn | 2.16 | MC |
| SRR5110432 | panicle | Dawn | 1.39 | MC |
| SRR4947496 | root | control | 1.94 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 2.03 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.16 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.62 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 3.15 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.44 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.25 | MC |
| SRR5110439 | panicle | Dawn + 7h | 2.44 | MC |
| SRR5110440 | panicle | Dawn + 7h | 3.96 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.67 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 2.51 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.59 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.97 | MC |
| SRR5110445 | panicle | Dusk | 1.17 | MC |
| SRR5110446 | panicle | Dusk | 1.46 | MC |
| SRR5110447 | panicle | Dusk | 1.86 | MC |
| SRR5110448 | panicle | Dusk | 2.57 | MC |
| SRR5110449 | panicle | Dawn + 14h | 3.11 | MC |
| SRR5110450 | panicle | Dawn + 14h | 2.22 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.98 | MC |
| SRR5110452 | panicle | Dawn + 14h | 2.92 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.96 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.02 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 3.77 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 2.14 | MC |
| SRR5110457 | panicle | Dawn + 21h | 2.10 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.85 | MC |
| SRR5110459 | panicle | Dawn + 21h | 2.18 | MC |
| SRR5110460 | panicle | Dawn + 21h | 3.59 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.48 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.42 | MC |
| SRR1633182 | panicle | WT | 0.47 | MC |
| SRR1633185 | panicle | WT | 0.58 | MC |
| SRR5126149 | root | "mock,1_day" | 0.69 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.56 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.40 | MC |
| SRR5126153 | root | "mock,7_days" | 0.32 | MC |
| SRR5126155 | root | "mock,7_days" | 0.60 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.49 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.60 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.01 | MC |
| SRR5126165 | root | "mock,14_days" | 0.48 | MC |
| SRR5126167 | root | "mock,14_days" | 0.33 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.67 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.35 | MC |
| SRR4947478 | root | control | 2.41 | MC |
| SRR4947479 | root | control | 0.62 | MC |
| SRR4947480 | root | control | 3.08 | MC |
| SRR4947483 | root | Al | 1.24 | MC |
| SRR4947484 | root | Al | 3.06 | MC |
| SRR4947485 | root | Al | 0.73 | MC |
| SRR4947487 | root | control | 1.70 | MC |
| SRR4947488 | root | control | 2.99 | MC |
| SRR4947489 | root | control | 0.50 | MC |
| SRR4947490 | root | Al | 3.74 | MC |
| SRR4947491 | root | Al | 0.88 | MC |
| SRR4947492 | root | Al | 1.06 | MC |
| SRR4947493 | root | Al | 0.76 | MC |
| SRR4947494 | root | control | 2.04 | MC |
| SRR4947497 | root | control | 4.18 | MC |
| SRR4947498 | root | Al | 3.47 | MC |
| SRR4947499 | root | Al | 2.66 | MC |
| SRR4947500 | root | Al | 4.98 | MC |
| SRR4947501 | root | Al | 1.10 | MC |
| SRR4947502 | root | control | 5.07 | MC |
| SRR4947503 | root | control | 2.46 | MC |
| SRR4947504 | root | control | 1.65 | MC |
| SRR4947505 | root | control | 1.17 | MC |
| SRR4947506 | root | Al | 0.67 | MC |
| SRR4947507 | root | Al | 3.66 | MC |
| SRR4947508 | root | Al | 3.55 | MC |
| SRR4947509 | root | Al | 1.06 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.10 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.07 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.68 | MC |
| SRR6502094 | root | control | 0.40 | MC |
| SRR6502095 | root | control | 0.75 | MC |
| SRR6502096 | root | control | 0.57 | MC |
| SRR6502106 | root | control | 0.35 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.30 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.63 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.47 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.52 | MC |
| SRR6441554 | seedling | wild_type | 0.48 | MC |
| SRR6441555 | seedling | wild_type | 0.33 | MC |
| SRR2154082 | seedling | wt | 1.46 | MC |
| SRR2154083 | seedling | wt | 2.46 | MC |
| SRR2154084 | seedling | wt | 0.28 | MC |
| SRR2154087 | seedling | wt | 2.50 | MC |
| SRR3098741 | seedling | wt | 0.25 | MC |
| SRR3098742 | seedling | wt | 0.43 | MC |
| SRR3098743 | seedling | wt | 0.27 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.54 | MC |
| SRR1944583 | seedling | no_treatment | 0.37 | MC |
| SRR358791 | seedling | wt | 0.94 | MC |
| SRR358792 | seedling | wt | 1.16 | MC |
| SRR358794 | seedling | wt | 0.70 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.32 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.18 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.86 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.54 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.47 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.58 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.41 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.88 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.54 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.85 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.78 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.57 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.35 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.32 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.46 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.42 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.77 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.63 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.48 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.46 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.61 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.48 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.84 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.55 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.60 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.60 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.41 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.41 | MC |