| SRR3745125 | anther | wt | 0.65 | MC |
| SRR3745127 | anther | wt | 0.51 | MC |
| SRR358795 | callus | wt | 1.15 | MC |
| SRR358797 | callus | wt | 1.04 | MC |
| SRR6320473 | carpel | wt | 1.38 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.42 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.77 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.79 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 2.68 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.96 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.57 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.44 | MC |
| SRR7265376 | embryo | 1hA | 1.45 | MC |
| SRR7265377 | embryo | 1hA | 1.59 | MC |
| SRR7265378 | embryo | 1hA | 1.34 | MC |
| SRR7265379 | embryo | 1hN | 0.66 | MC |
| SRR7265380 | embryo | 1hN | 1.25 | MC |
| SRR7265381 | embryo | 1hN | 1.07 | MC |
| SRR7265383 | embryo | 3hA | 3.18 | MC |
| SRR7265385 | embryo | 3hN | 1.44 | MC |
| SRR7265386 | embryo | 3hN | 0.95 | MC |
| SRR7265387 | embryo | 3hN | 1.16 | MC |
| SRR7265393 | embryo | 12hN | 0.58 | MC |
| SRR7265398 | embryo | 24hN | 0.50 | MC |
| SRR2338866 | endosprem | control | 1.90 | MC |
| SRR2338867 | endosprem | control | 0.65 | MC |
| SRR2338869 | endosprem | high_temperature | 1.09 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.58 | MC |
| SRR8240824 | leaf | wild_type | 0.56 | MC |
| SRR8240825 | leaf | wild_type | 0.77 | MC |
| SRR8240826 | leaf | wild_type | 0.55 | MC |
| SRR8240820 | leaf | wild_type | 0.31 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.39 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.06 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.96 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.15 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.00 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.96 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.98 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.50 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.60 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.70 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.21 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.57 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.13 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.41 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 1.30 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.95 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.39 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.85 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.63 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.88 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.17 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.61 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.51 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.56 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.92 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.57 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 3.84 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 3.69 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 3.81 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 3.66 | MC |
| SRR1761528 | leaf | drought | 3.78 | MC |
| SRR1761529 | leaf | drought | 3.65 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.25 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.11 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.27 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.55 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.23 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.95 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.60 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.35 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.73 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.18 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.23 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.94 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.20 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.29 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.38 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.26 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.68 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.56 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.36 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.33 | MC |
| SRR1213692 | leaf | wt | 0.43 | MC |
| SRR1213693 | leaf | wt | 0.71 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.18 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.71 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 2.01 | MC |
| SRR6502090 | leaf | control | 0.42 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.44 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.61 | MC |
| SRR6502101 | leaf | control | 0.39 | MC |
| SRR5856936 | leaf | salt | 0.16 | MC |
| SRR5856937 | leaf | salt | 0.33 | MC |
| SRR5856938 | leaf | salt | 0.44 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 4.96 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 3.92 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.65 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.83 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.64 | MC |
| SRR5110445 | panicle | Dusk | 0.70 | MC |
| SRR5110447 | panicle | Dusk | 0.45 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.27 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.73 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.28 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.45 | MC |
| SRR1633182 | panicle | WT | 0.41 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.35 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.27 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.37 | MC |
| SRR5126155 | root | "mock,7_days" | 0.31 | MC |
| SRR5126157 | root | "mock,7_days" | 1.18 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.52 | MC |
| SRR5126165 | root | "mock,14_days" | 0.46 | MC |
| SRR5126167 | root | "mock,14_days" | 0.39 | MC |
| SRR5126169 | root | "mock,14_days" | 0.45 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.33 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.20 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.75 | MC |
| SRR1213694 | root | wt | 0.48 | MC |
| SRR1213695 | root | wt | 0.39 | MC |
| SRR4947478 | root | control | 0.75 | MC |
| SRR4947479 | root | control | 0.56 | MC |
| SRR4947483 | root | Al | 0.43 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.38 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.68 | MC |
| SRR6502096 | root | control | 0.39 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.40 | MC |
| SRR2154082 | seedling | wt | 0.33 | MC |
| SRR3098741 | seedling | wt | 0.68 | MC |
| SRR3098743 | seedling | wt | 0.22 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.25 | MC |
| SRR358791 | seedling | wt | 0.58 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.18 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.14 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.63 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.12 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.78 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.13 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.45 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.15 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.07 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.87 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.33 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.65 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.52 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.49 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.61 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.34 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.34 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.19 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.44 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.42 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.42 | MC |