| SRR4457249 | 2nd_leaf | DAH4 | 1.47 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 2.21 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 2.26 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 3.18 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 2.77 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 3.03 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 3.49 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 4.16 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 2.39 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 2.52 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 3.16 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 2.33 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 2.45 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.93 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 2.46 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.29 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.97 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 2.72 | MC |
| SRR5560727 | caryopsis | wild_type | 0.55 | MC |
| SRR5560729 | caryopsis | wild_type | 0.39 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.46 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.73 | MC |
| SRR7265400 | coleoptile | 2dA | 1.68 | MC |
| SRR7265401 | coleoptile | 2dA | 1.29 | MC |
| SRR7265402 | coleoptile | 2dA | 0.94 | MC |
| SRR7265403 | coleoptile | 2dN | 2.47 | MC |
| SRR7265404 | coleoptile | 2dN | 2.27 | MC |
| SRR7265405 | coleoptile | 2dN | 1.70 | MC |
| SRR7265407 | coleoptile | 3dA | 3.19 | MC |
| SRR7265409 | coleoptile | 3dN | 0.94 | MC |
| SRR7265410 | coleoptile | 3dN | 0.49 | MC |
| SRR7265411 | coleoptile | 3dN | 1.07 | MC |
| SRR7265412 | coleoptile | 4dA | 2.59 | MC |
| SRR7265413 | coleoptile | 4dA | 4.47 | MC |
| SRR7265414 | coleoptile | 4dA | 1.91 | MC |
| SRR7265415 | coleoptile | 4dN | 1.00 | MC |
| SRR7265416 | coleoptile | 4dN | 1.83 | MC |
| SRR7265417 | coleoptile | 4dN | 1.28 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 3.63 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 3.16 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.36 | MC |
| SRR7265373 | embryo | dry seed 0 h | 2.21 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.18 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.16 | MC |
| SRR7265376 | embryo | 1hA | 2.38 | MC |
| SRR7265377 | embryo | 1hA | 1.46 | MC |
| SRR7265378 | embryo | 1hA | 2.56 | MC |
| SRR7265379 | embryo | 1hN | 2.55 | MC |
| SRR7265380 | embryo | 1hN | 2.81 | MC |
| SRR7265382 | embryo | 3hA | 3.83 | MC |
| SRR7265383 | embryo | 3hA | 4.78 | MC |
| SRR7265384 | embryo | 3hA | 3.67 | MC |
| SRR7265388 | embryo | 12hA | 2.91 | MC |
| SRR7265389 | embryo | 12hA | 3.20 | MC |
| SRR7265390 | embryo | 12hA | 2.40 | MC |
| SRR7265391 | embryo | 12hN | 1.38 | MC |
| SRR7265392 | embryo | 12hN | 3.24 | MC |
| SRR7265393 | embryo | 12hN | 1.94 | MC |
| SRR7265394 | embryo | 24hA | 1.46 | MC |
| SRR7265395 | embryo | 24hA | 1.79 | MC |
| SRR7265396 | embryo | 24hA | 1.44 | MC |
| SRR7265397 | embryo | 24hN | 2.06 | MC |
| SRR7265398 | embryo | 24hN | 1.17 | MC |
| SRR7265399 | embryo | 24hN | 2.10 | MC |
| SRR4457231 | flag_leaf | DAH4 | 3.17 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.70 | MC |
| SRR4457244 | flag_leaf | DAH36 | 2.37 | MC |
| SRR4457245 | flag_leaf | DAH36 | 2.37 | MC |
| SRR4457246 | flag_leaf | DAH44 | 3.02 | MC |
| SRR4457247 | flag_leaf | DAH44 | 3.62 | MC |
| SRR4457248 | flag_leaf | DAH44 | 6.37 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.34 | MC |
| SRR8240824 | leaf | wild_type | 0.48 | MC |
| SRR8240825 | leaf | wild_type | 2.25 | MC |
| SRR8240826 | leaf | wild_type | 1.27 | MC |
| SRR8240818 | leaf | wild_type | 0.73 | MC |
| SRR8240819 | leaf | wild_type | 1.25 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.74 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.75 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.32 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.98 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.42 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.18 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.40 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.82 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.74 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.85 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.61 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.84 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.07 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.88 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.25 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.93 | MC |
| SRR504365 | leaf | wt | 0.42 | MC |
| SRR6417967 | leaf | H2O_control | 0.55 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.72 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.71 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.05 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.36 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.29 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.24 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.23 | MC |
| SRR5856930 | leaf | salt | 0.30 | MC |
| SRR5856933 | leaf | control | 0.36 | MC |
| SRR5856934 | leaf | control | 0.28 | MC |
| SRR5856935 | leaf | control | 0.23 | MC |
| SRR6168981 | leaf | none (control) | 0.71 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.28 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.25 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.66 | MC |
| SRR8582889 | panicle | AM | 0.24 | MC |
| SRR8582890 | panicle | AM | 0.67 | MC |
| SRR5110446 | panicle | Dusk | 0.68 | MC |
| SRR5110448 | panicle | Dusk | 0.81 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.46 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.53 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.66 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.60 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.41 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.52 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.69 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.69 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.54 | MC |
| SRR5126147 | root | "mock,1_day" | 0.30 | MC |
| SRR5126149 | root | "mock,1_day" | 0.77 | MC |
| SRR5126153 | root | "mock,7_days" | 0.39 | MC |
| SRR5126155 | root | "mock,7_days" | 0.69 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.36 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.44 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.60 | MC |
| SRR5126165 | root | "mock,14_days" | 0.85 | MC |
| SRR5126167 | root | "mock,14_days" | 1.12 | MC |
| SRR5126169 | root | "mock,14_days" | 0.48 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.42 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.67 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.61 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.30 | MC |
| SRR1213695 | root | wt | 0.24 | MC |
| SRR6441555 | seedling | wild_type | 0.42 | MC |
| SRR2154086 | seedling | wt | 0.54 | MC |
| SRR3098741 | seedling | wt | 2.08 | MC |
| SRR3098742 | seedling | wt | 2.07 | MC |
| SRR3098743 | seedling | wt | 2.09 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.59 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.58 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.54 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 3.02 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.44 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.90 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.72 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 2.69 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 2.19 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.57 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.33 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.47 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.79 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.93 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.81 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.63 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.58 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.08 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.52 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.43 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.96 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.53 | MC |