| SRR4457252 | 2nd_leaf | DAH12 | 0.51 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.54 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.34 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.47 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.37 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.51 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.53 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.57 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.54 | MC |
| SRR6320498 | carpel | wt | 2.09 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.49 | MC |
| SRR7265400 | coleoptile | 2dA | 0.50 | MC |
| SRR7265401 | coleoptile | 2dA | 0.72 | MC |
| SRR7265402 | coleoptile | 2dA | 0.51 | MC |
| SRR7265406 | coleoptile | 3dA | 1.29 | MC |
| SRR7265407 | coleoptile | 3dA | 1.55 | MC |
| SRR7265408 | coleoptile | 3dA | 1.23 | MC |
| SRR7265412 | coleoptile | 4dA | 0.49 | MC |
| SRR7265413 | coleoptile | 4dA | 0.69 | MC |
| SRR7265414 | coleoptile | 4dA | 0.46 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.87 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 0.61 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.15 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.32 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.47 | MC |
| SRR7265377 | embryo | 1hA | 0.41 | MC |
| SRR7265378 | embryo | 1hA | 0.23 | MC |
| SRR7265379 | embryo | 1hN | 0.41 | MC |
| SRR7265381 | embryo | 1hN | 0.35 | MC |
| SRR7265382 | embryo | 3hA | 0.42 | MC |
| SRR7265384 | embryo | 3hA | 0.36 | MC |
| SRR7265386 | embryo | 3hN | 0.32 | MC |
| SRR7265396 | embryo | 24hA | 0.47 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.20 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.26 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.34 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.70 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.38 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.71 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.74 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.50 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.68 | MC |
| SRR8240824 | leaf | wild_type | 0.99 | MC |
| SRR8240825 | leaf | wild_type | 0.74 | MC |
| SRR8240826 | leaf | wild_type | 2.07 | MC |
| SRR8240818 | leaf | wild_type | 0.29 | MC |
| SRR8240819 | leaf | wild_type | 0.68 | MC |
| SRR8240820 | leaf | wild_type | 0.57 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.34 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.71 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.40 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.00 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.33 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.24 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.59 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 0.84 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.42 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.46 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.53 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.42 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.16 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.43 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.58 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.84 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.61 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.72 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.90 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.72 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.90 | MC |
| SRR1761530 | leaf | control | 0.72 | MC |
| SRR1761531 | leaf | control | 0.90 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.64 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.34 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.41 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.58 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.35 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.25 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.82 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.52 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.89 | MC |
| SRR6502089 | leaf | control | 0.42 | MC |
| SRR5856927 | leaf | control | 0.82 | MC |
| SRR5856928 | leaf | control | 0.23 | MC |
| SRR5856929 | leaf | control | 0.89 | MC |
| SRR5856930 | leaf | salt | 0.63 | MC |
| SRR5856931 | leaf | salt | 0.36 | MC |
| SRR5856932 | leaf | salt | 0.31 | MC |
| SRR5856933 | leaf | control | 0.81 | MC |
| SRR5856934 | leaf | control | 1.25 | MC |
| SRR5856935 | leaf | control | 0.49 | MC |
| SRR5856936 | leaf | salt | 0.44 | MC |
| SRR5856937 | leaf | salt | 0.32 | MC |
| SRR5856938 | leaf | salt | 0.75 | MC |
| SRR6168974 | leaf | none (control) | 0.46 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.68 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.97 | MC |
| SRR6168979 | leaf | none (control) | 0.19 | MC |
| SRR6168980 | leaf | none (control) | 0.30 | MC |
| SRR6168981 | leaf | none (control) | 0.26 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.39 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.72 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.41 | MC |
| SRR8582889 | panicle | AM | 0.13 | MC |
| SRR8582890 | panicle | AM | 0.46 | MC |
| SRR5126169 | root | "mock,14_days" | 0.31 | MC |
| SRR1213695 | root | wt | 0.13 | MC |
| SRR4947484 | root | Al | 0.84 | MC |
| SRR4947492 | root | Al | 0.76 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.67 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.47 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.42 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.75 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.39 | MC |
| SRR6441554 | seedling | wild_type | 0.25 | MC |
| SRR2154085 | seedling | wt | 0.57 | MC |
| SRR2154087 | seedling | wt | 0.34 | MC |
| SRR3098741 | seedling | wt | 0.30 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.78 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.44 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.73 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.55 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.26 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.22 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.90 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.80 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.15 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.92 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.82 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.24 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.03 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.96 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.56 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.01 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.07 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.72 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.34 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.64 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.40 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.31 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.43 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.56 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.70 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.41 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.13 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.08 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.39 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.80 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.96 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.94 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.43 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.64 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.39 | MC |