| SRR4457253 | 2nd_leaf | DAH12 | 0.71 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.29 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.61 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.48 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.44 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.04 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.60 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.90 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 2.07 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.78 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.93 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.00 | MC |
| SRR5560728 | caryopsis | wild_type | 3.66 | MC |
| SRR5560729 | caryopsis | wild_type | 1.89 | MC |
| SRR4947495 | root | control | 0.47 | MC |
| SRR7265403 | coleoptile | 2dN | 3.69 | MC |
| SRR7265404 | coleoptile | 2dN | 2.95 | MC |
| SRR7265405 | coleoptile | 2dN | 2.35 | MC |
| SRR7265410 | coleoptile | 3dN | 3.75 | MC |
| SRR7265415 | coleoptile | 4dN | 3.56 | MC |
| SRR7265416 | coleoptile | 4dN | 3.91 | MC |
| SRR7265417 | coleoptile | 4dN | 3.85 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 3.21 | MC |
| SRR7265388 | embryo | 12hA | 2.65 | MC |
| SRR7265389 | embryo | 12hA | 3.62 | MC |
| SRR7265390 | embryo | 12hA | 2.68 | MC |
| SRR7265393 | embryo | 12hN | 0.47 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.21 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.39 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.21 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.40 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.21 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.47 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.06 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.78 | MC |
| SRR1213691 | flower | wt | 0.67 | MC |
| SRR8060835 | leaf | wild_type | 0.39 | MC |
| SRR8060836 | leaf | wild_type | 0.71 | MC |
| SRR8060837 | leaf | wild_type | 0.71 | MC |
| SRR8240824 | leaf | wild_type | 0.49 | MC |
| SRR8240825 | leaf | wild_type | 0.28 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.61 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.86 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.78 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.76 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.38 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.72 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.82 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 6.16 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.21 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.10 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.78 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.95 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 4.70 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 1.75 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.24 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.36 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.71 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.01 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.77 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.44 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.12 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.94 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 5.26 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.22 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.36 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.91 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 2.27 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 4.46 | MC |
| SRR504365 | leaf | wt | 0.39 | MC |
| SRR6417967 | leaf | H2O_control | 1.12 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.44 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.90 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.40 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 2.10 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.81 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.46 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.14 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.90 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.26 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.77 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.60 | MC |
| SRR1213692 | leaf | wt | 0.85 | MC |
| SRR1213693 | leaf | wt | 0.49 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.10 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.87 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.89 | MC |
| SRR6502088 | leaf | control | 2.43 | MC |
| SRR6502089 | leaf | control | 3.50 | MC |
| SRR6502090 | leaf | control | 2.09 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 3.00 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 3.75 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 2.97 | MC |
| SRR6502101 | leaf | control | 3.40 | MC |
| SRR6502102 | leaf | control | 3.73 | MC |
| SRR5856933 | leaf | control | 2.46 | MC |
| SRR5856935 | leaf | control | 2.17 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.74 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 2.19 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 3.21 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 3.36 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.53 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 2.26 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.25 | MC |
| SRR5110429 | panicle | Dawn | 1.62 | MC |
| SRR5110430 | panicle | Dawn | 2.04 | MC |
| SRR5110431 | panicle | Dawn | 1.69 | MC |
| SRR4947496 | root | control | 3.21 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.73 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 0.81 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.43 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.17 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.79 | MC |
| SRR5110440 | panicle | Dawn + 7h | 5.38 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 2.09 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 2.95 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 3.67 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 5.06 | MC |
| SRR5110445 | panicle | Dusk | 4.15 | MC |
| SRR5110446 | panicle | Dusk | 1.14 | MC |
| SRR5110447 | panicle | Dusk | 2.67 | MC |
| SRR5110448 | panicle | Dusk | 1.68 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.34 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.44 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.39 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.06 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.35 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.20 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.25 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.60 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.43 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.73 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.62 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.16 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 2.28 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.89 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 4.40 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.43 | MC |
| SRR5126147 | root | "mock,1_day" | 0.93 | MC |
| SRR5126148 | root | "mock,1_day" | 1.45 | MC |
| SRR5126149 | root | "mock,1_day" | 0.41 | MC |
| SRR5126153 | root | "mock,7_days" | 0.30 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.58 | MC |
| SRR5126165 | root | "mock,14_days" | 0.42 | MC |
| SRR5126167 | root | "mock,14_days" | 0.57 | MC |
| SRR5126169 | root | "mock,14_days" | 1.01 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.97 | MC |
| SRR1213695 | root | wt | 0.69 | MC |
| SRR4947478 | root | control | 2.65 | MC |
| SRR4947479 | root | control | 1.47 | MC |
| SRR4947480 | root | control | 2.98 | MC |
| SRR4947481 | root | control | 3.58 | MC |
| SRR4947482 | root | Al | 0.55 | MC |
| SRR4947483 | root | Al | 1.29 | MC |
| SRR4947484 | root | Al | 3.14 | MC |
| SRR4947485 | root | Al | 2.46 | MC |
| SRR4947487 | root | control | 1.03 | MC |
| SRR4947488 | root | control | 2.25 | MC |
| SRR4947489 | root | control | 1.95 | MC |
| SRR4947490 | root | Al | 1.81 | MC |
| SRR4947491 | root | Al | 0.50 | MC |
| SRR4947492 | root | Al | 3.09 | MC |
| SRR4947493 | root | Al | 1.31 | MC |
| SRR4947494 | root | control | 2.90 | MC |
| SRR4947497 | root | control | 2.57 | MC |
| SRR4947498 | root | Al | 1.33 | MC |
| SRR4947499 | root | Al | 0.82 | MC |
| SRR4947500 | root | Al | 1.33 | MC |
| SRR4947501 | root | Al | 1.00 | MC |
| SRR4947502 | root | control | 0.88 | MC |
| SRR4947503 | root | control | 1.06 | MC |
| SRR4947504 | root | control | 3.33 | MC |
| SRR4947505 | root | control | 2.22 | MC |
| SRR4947506 | root | Al | 0.62 | MC |
| SRR4947508 | root | Al | 3.07 | MC |
| SRR4947509 | root | Al | 2.87 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.61 | MC |
| SRR6502092 | root | 100 mM NaCl | 3.10 | MC |
| SRR6502093 | root | 100 mM NaCl | 3.49 | MC |
| SRR6502094 | root | control | 3.18 | MC |
| SRR6502095 | root | control | 2.77 | MC |
| SRR6502096 | root | control | 4.15 | MC |
| SRR6502103 | root | 100 mM NaCl | 4.12 | MC |
| SRR6502104 | root | 100 mM NaCl | 4.36 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.83 | MC |
| SRR6502106 | root | control | 1.25 | MC |
| SRR6502107 | root | control | 1.69 | MC |
| SRR6502108 | root | control | 1.79 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.37 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.13 | MC |
| SRR1740436 | root_differentiation_zone | wt | 2.88 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.50 | MC |
| SRR6441555 | seedling | wild_type | 0.68 | MC |
| SRR2154082 | seedling | wt | 1.55 | MC |
| SRR2154083 | seedling | wt | 3.05 | MC |
| SRR2154087 | seedling | wt | 3.65 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.51 | MC |
| SRR1944583 | seedling | no_treatment | 3.75 | MC |
| SRR358791 | seedling | wt | 2.62 | MC |
| SRR358792 | seedling | wt | 1.97 | MC |
| SRR358793 | seedling | wt | 2.38 | MC |
| SRR358794 | seedling | wt | 1.93 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.87 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 3.89 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.12 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.85 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.56 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.37 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.24 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.04 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.60 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.12 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.88 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.78 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.45 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.52 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.92 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.79 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 3.21 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.78 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.16 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.95 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.59 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.88 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.04 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.79 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.00 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.88 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.64 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.49 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.37 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.12 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 4.11 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.89 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.73 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.59 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 2.59 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 4.40 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 3.43 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.09 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 2.33 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.43 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 2.93 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 2.57 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 2.41 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.32 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.89 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.16 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.74 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 1.58 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 1.72 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.86 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 2.72 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 2.79 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 4.46 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 5.85 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.45 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.11 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 2.00 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.48 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.43 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.54 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.77 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.05 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.34 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.92 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.73 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 2.31 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.85 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.16 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.49 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.13 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.78 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.35 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.61 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.96 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.50 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.11 | MC |