| SRR4457257 | 2nd_leaf | DAH20 | 0.53 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.24 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.60 | MC |
| SRR3745125 | anther | wt | 3.30 | MC |
| SRR3745126 | anther | wt | 3.31 | MC |
| SRR3745127 | anther | wt | 5.19 | MC |
| SRR358795 | callus | wt | 4.13 | MC |
| SRR358796 | callus | wt | 3.93 | MC |
| SRR358797 | callus | wt | 4.49 | MC |
| SRR358798 | callus | wt | 2.94 | MC |
| SRR6320473 | carpel | wt | 3.54 | MC |
| SRR6320498 | carpel | wt | 1.99 | MC |
| SRR5560727 | caryopsis | wild_type | 4.08 | MC |
| SRR5560728 | caryopsis | wild_type | 4.18 | MC |
| SRR5560729 | caryopsis | wild_type | 4.80 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 3.52 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.76 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.42 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.50 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.54 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.95 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.18 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 3.26 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 3.52 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.92 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 3.99 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 2.83 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 2.67 | MC |
| SRR2338866 | endosprem | control | 2.64 | MC |
| SRR2338868 | endosprem | high_temperature | 0.64 | MC |
| SRR2338869 | endosprem | high_temperature | 1.79 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.34 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.34 | MC |
| SRR4457247 | flag_leaf | DAH44 | 0.90 | MC |
| SRR8060835 | leaf | wild_type | 0.82 | MC |
| SRR8060836 | leaf | wild_type | 0.39 | MC |
| SRR8240824 | leaf | wild_type | 0.90 | MC |
| SRR8240825 | leaf | wild_type | 0.70 | MC |
| SRR8240818 | leaf | wild_type | 0.39 | MC |
| SRR8240819 | leaf | wild_type | 0.47 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.23 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.28 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.54 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.44 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.48 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.25 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.67 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.48 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.74 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.40 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.97 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.41 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.11 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.00 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.62 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.65 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.22 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.77 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.88 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.06 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.99 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.99 | MC |
| SRR1761531 | leaf | control | 0.99 | MC |
| SRR504365 | leaf | wt | 0.52 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.76 | MC |
| SRR6417969 | leaf | H2O_control | 0.46 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.40 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.46 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.68 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.23 | MC |
| SRR1213692 | leaf | wt | 0.76 | MC |
| SRR1213693 | leaf | wt | 0.53 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.41 | MC |
| SRR6502100 | leaf | control | 0.47 | MC |
| SRR6502102 | leaf | control | 1.35 | MC |
| SRR8582889 | panicle | AM | 0.22 | MC |
| SRR8582891 | panicle | PM | 0.99 | MC |
| SRR8582893 | panicle | PM | 0.47 | MC |
| SRR5110430 | panicle | Dawn | 2.78 | MC |
| SRR5110431 | panicle | Dawn | 2.37 | MC |
| SRR4947496 | root | control | 4.42 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 2.97 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 2.13 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 2.94 | MC |
| SRR5110437 | panicle | Dawn + 7h | 3.34 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.60 | MC |
| SRR5110439 | panicle | Dawn + 7h | 3.21 | MC |
| SRR5110440 | panicle | Dawn + 7h | 3.64 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 4.27 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 3.37 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 4.08 | MC |
| SRR5110445 | panicle | Dusk | 3.26 | MC |
| SRR5110448 | panicle | Dusk | 3.49 | MC |
| SRR5110449 | panicle | Dawn + 14h | 2.71 | MC |
| SRR5110450 | panicle | Dawn + 14h | 2.13 | MC |
| SRR5110451 | panicle | Dawn + 14h | 3.47 | MC |
| SRR5110452 | panicle | Dawn + 14h | 3.13 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 3.04 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.48 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 3.18 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 3.55 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.67 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.38 | MC |
| SRR5110459 | panicle | Dawn + 21h | 3.50 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.17 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.33 | MC |
| SRR5126155 | root | "mock,7_days" | 4.38 | MC |
| SRR5126157 | root | "mock,7_days" | 2.19 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 4.88 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 4.22 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 4.55 | MC |
| SRR5126165 | root | "mock,14_days" | 3.78 | MC |
| SRR5126167 | root | "mock,14_days" | 3.63 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 3.97 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 4.62 | MC |
| SRR1213694 | root | wt | 1.51 | MC |
| SRR1213695 | root | wt | 0.86 | MC |
| SRR4947482 | root | Al | 1.90 | MC |
| SRR4947492 | root | Al | 5.28 | MC |
| SRR4947494 | root | control | 3.47 | MC |
| SRR4947497 | root | control | 1.43 | MC |
| SRR4947500 | root | Al | 4.28 | MC |
| SRR4947501 | root | Al | 6.08 | MC |
| SRR4947502 | root | control | 3.71 | MC |
| SRR4947505 | root | control | 3.85 | MC |
| SRR4947507 | root | Al | 3.39 | MC |
| SRR4947508 | root | Al | 2.48 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.07 | MC |
| SRR6502094 | root | control | 0.74 | MC |
| SRR6502095 | root | control | 0.58 | MC |
| SRR6502103 | root | 100 mM NaCl | 4.70 | MC |
| SRR6502106 | root | control | 2.57 | MC |
| SRR6502107 | root | control | 2.85 | MC |
| SRR6502108 | root | control | 4.39 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.25 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.37 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.54 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.70 | MC |
| SRR6441554 | seedling | wild_type | 0.35 | MC |
| SRR2154086 | seedling | wt | 2.92 | MC |
| SRR2154083 | seedling | wt | 1.87 | MC |
| SRR2154084 | seedling | wt | 2.87 | MC |
| SRR2154087 | seedling | wt | 2.61 | MC |
| SRR3098741 | seedling | wt | 0.56 | MC |
| SRR3098742 | seedling | wt | 0.34 | MC |
| SRR3098743 | seedling | wt | 0.49 | MC |
| SRR2857719 | seedling | drought_stress_0h | 2.71 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.80 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.27 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.58 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.54 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.20 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.92 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.15 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.30 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.61 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.20 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.67 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.02 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.05 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.34 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.96 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.54 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.31 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.40 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.88 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.46 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.80 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.58 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.79 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.47 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.38 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.58 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.42 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.43 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 8.25 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 7.53 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 4.60 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 7.53 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 6.44 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 7.24 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 6.86 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 9.19 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 6.51 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 3.19 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 6.18 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 4.18 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 6.94 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 4.72 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 2.48 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 3.86 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 4.00 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 3.47 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 3.07 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.53 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.59 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.57 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.71 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.64 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.59 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 2.30 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 2.65 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.92 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 3.21 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.33 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 2.45 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.92 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.49 | MC |