| SRR5560728 | caryopsis | wild_type | 1.76 | MC |
| SRR5560729 | caryopsis | wild_type | 1.10 | MC |
| SRR4947495 | root | control | 0.81 | MC |
| SRR7265409 | coleoptile | 3dN | 0.93 | MC |
| SRR7265410 | coleoptile | 3dN | 0.58 | MC |
| SRR7265411 | coleoptile | 3dN | 0.46 | MC |
| SRR7265415 | coleoptile | 4dN | 0.65 | MC |
| SRR7265416 | coleoptile | 4dN | 1.12 | MC |
| SRR7265417 | coleoptile | 4dN | 1.13 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.53 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.60 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.73 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.44 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.46 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.53 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.64 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.93 | MC |
| SRR1213691 | flower | wt | 0.49 | MC |
| SRR8060836 | leaf | wild_type | 0.27 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.75 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.03 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.05 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.26 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.25 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.27 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.37 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.30 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.21 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.26 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.23 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.02 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.95 | MC |
| SRR5856927 | leaf | control | 0.30 | MC |
| SRR5856928 | leaf | control | 0.32 | MC |
| SRR5856929 | leaf | control | 0.43 | MC |
| SRR5856932 | leaf | salt | 0.26 | MC |
| SRR5856933 | leaf | control | 0.43 | MC |
| SRR5856934 | leaf | control | 0.54 | MC |
| SRR5856935 | leaf | control | 0.94 | MC |
| SRR5856936 | leaf | salt | 0.21 | MC |
| SRR5856937 | leaf | salt | 0.29 | MC |
| SRR5856938 | leaf | salt | 0.31 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.41 | MC |
| SRR5110429 | panicle | Dawn | 0.92 | MC |
| SRR5110431 | panicle | Dawn | 0.66 | MC |
| SRR5110432 | panicle | Dawn | 1.03 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 0.56 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.29 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.71 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.82 | MC |
| SRR5110440 | panicle | Dawn + 7h | 0.84 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.20 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.12 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.25 | MC |
| SRR5110445 | panicle | Dusk | 1.10 | MC |
| SRR5110446 | panicle | Dusk | 1.11 | MC |
| SRR5110447 | panicle | Dusk | 0.62 | MC |
| SRR5110448 | panicle | Dusk | 0.93 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.16 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.21 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.25 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.78 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.66 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.10 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.63 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.64 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.42 | MC |
| SRR1633182 | panicle | WT | 0.39 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.33 | MC |
| SRR5126147 | root | "mock,1_day" | 0.94 | MC |
| SRR5126148 | root | "mock,1_day" | 0.84 | MC |
| SRR5126149 | root | "mock,1_day" | 1.40 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.01 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.43 | MC |
| SRR5126153 | root | "mock,7_days" | 1.28 | MC |
| SRR5126155 | root | "mock,7_days" | 1.05 | MC |
| SRR5126157 | root | "mock,7_days" | 0.41 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.47 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.43 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.43 | MC |
| SRR5126165 | root | "mock,14_days" | 1.02 | MC |
| SRR5126167 | root | "mock,14_days" | 0.70 | MC |
| SRR5126169 | root | "mock,14_days" | 0.89 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.56 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.69 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.05 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.34 | MC |
| SRR1213694 | root | wt | 1.40 | MC |
| SRR4947478 | root | control | 0.84 | MC |
| SRR4947479 | root | control | 1.17 | MC |
| SRR4947483 | root | Al | 0.86 | MC |
| SRR4947487 | root | control | 0.49 | MC |
| SRR4947489 | root | control | 0.48 | MC |
| SRR4947490 | root | Al | 0.67 | MC |
| SRR4947491 | root | Al | 0.97 | MC |
| SRR4947494 | root | control | 0.68 | MC |
| SRR4947502 | root | control | 1.11 | MC |
| SRR4947503 | root | control | 1.37 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.53 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.52 | MC |
| SRR6502094 | root | control | 1.31 | MC |
| SRR6502095 | root | control | 1.46 | MC |
| SRR6502096 | root | control | 1.66 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.00 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.66 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.66 | MC |
| SRR6502106 | root | control | 3.40 | MC |
| SRR6502107 | root | control | 2.87 | MC |
| SRR6502108 | root | control | 1.68 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.70 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.32 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.71 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.07 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.64 | MC |
| SRR2154086 | seedling | wt | 0.43 | MC |
| SRR2154082 | seedling | wt | 1.03 | MC |
| SRR2154083 | seedling | wt | 0.36 | MC |
| SRR2154084 | seedling | wt | 0.33 | MC |
| SRR3098741 | seedling | wt | 0.18 | MC |
| SRR3098742 | seedling | wt | 0.19 | MC |
| SRR3098743 | seedling | wt | 0.30 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.55 | MC |
| SRR1944583 | seedling | no_treatment | 0.36 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.04 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.19 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.41 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.34 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.80 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.60 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.05 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.29 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.31 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.47 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.22 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.17 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.25 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.51 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.63 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.45 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.41 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.43 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.02 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.72 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.53 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.78 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.75 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.64 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.44 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.24 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.37 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.19 | MC |