| SRR4457249 | 2nd_leaf | DAH4 | 1.94 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.58 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.51 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.99 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.01 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.68 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 2.25 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.97 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.54 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.61 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.82 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.37 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.78 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.64 | MC |
| SRR5560727 | caryopsis | wild_type | 0.33 | MC |
| SRR5560729 | caryopsis | wild_type | 0.37 | MC |
| SRR4947495 | root | control | 1.59 | MC |
| SRR7265400 | coleoptile | 2dA | 0.49 | MC |
| SRR7265401 | coleoptile | 2dA | 0.35 | MC |
| SRR7265402 | coleoptile | 2dA | 0.83 | MC |
| SRR7265405 | coleoptile | 2dN | 0.44 | MC |
| SRR7265413 | coleoptile | 4dA | 0.52 | MC |
| SRR7265414 | coleoptile | 4dA | 0.62 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.22 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.00 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.33 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.75 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.73 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.63 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.93 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.43 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.37 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.41 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.48 | MC |
| SRR7265373 | embryo | dry seed 0 h | 2.28 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.74 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.37 | MC |
| SRR7265376 | embryo | 1hA | 1.32 | MC |
| SRR7265377 | embryo | 1hA | 0.95 | MC |
| SRR7265378 | embryo | 1hA | 1.73 | MC |
| SRR7265379 | embryo | 1hN | 1.48 | MC |
| SRR7265380 | embryo | 1hN | 0.85 | MC |
| SRR7265381 | embryo | 1hN | 1.15 | MC |
| SRR7265382 | embryo | 3hA | 0.97 | MC |
| SRR7265384 | embryo | 3hA | 0.94 | MC |
| SRR7265385 | embryo | 3hN | 1.55 | MC |
| SRR7265386 | embryo | 3hN | 0.92 | MC |
| SRR7265387 | embryo | 3hN | 1.35 | MC |
| SRR7265388 | embryo | 12hA | 0.70 | MC |
| SRR7265389 | embryo | 12hA | 0.57 | MC |
| SRR7265390 | embryo | 12hA | 1.00 | MC |
| SRR7265393 | embryo | 12hN | 0.83 | MC |
| SRR7265394 | embryo | 24hA | 0.65 | MC |
| SRR7265395 | embryo | 24hA | 0.64 | MC |
| SRR7265396 | embryo | 24hA | 0.60 | MC |
| SRR7265397 | embryo | 24hN | 0.57 | MC |
| SRR7265399 | embryo | 24hN | 0.40 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.39 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.68 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.48 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.56 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.59 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.83 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.68 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.56 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.87 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.05 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.36 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.55 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.49 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.40 | MC |
| SRR8060835 | leaf | wild_type | 0.21 | MC |
| SRR8060836 | leaf | wild_type | 0.32 | MC |
| SRR8060837 | leaf | wild_type | 0.27 | MC |
| SRR8240824 | leaf | wild_type | 0.47 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.36 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.38 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.47 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.21 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.31 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.16 | MC |
| SRR504365 | leaf | wt | 0.71 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.34 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.50 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.66 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.68 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.47 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.37 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.37 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.54 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.72 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.54 | MC |
| SRR1213692 | leaf | wt | 0.67 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.48 | MC |
| SRR5856927 | leaf | control | 0.20 | MC |
| SRR5856928 | leaf | control | 0.26 | MC |
| SRR5856929 | leaf | control | 0.32 | MC |
| SRR5856933 | leaf | control | 0.52 | MC |
| SRR5856934 | leaf | control | 0.21 | MC |
| SRR5856935 | leaf | control | 0.50 | MC |
| SRR5856936 | leaf | salt | 0.22 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 1.90 | MC |
| SRR6168979 | leaf | none (control) | 0.19 | MC |
| SRR8582891 | panicle | PM | 0.84 | MC |
| SRR8582893 | panicle | PM | 0.49 | MC |
| SRR5110431 | panicle | Dawn | 0.36 | MC |
| SRR4947496 | root | control | 0.63 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 0.70 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.57 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.34 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.62 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.49 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.97 | MC |
| SRR1633185 | panicle | WT | 1.20 | MC |
| SRR5126147 | root | "mock,1_day" | 1.38 | MC |
| SRR5126148 | root | "mock,1_day" | 0.80 | MC |
| SRR5126149 | root | "mock,1_day" | 1.76 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.69 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.43 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.49 | MC |
| SRR5126155 | root | "mock,7_days" | 1.72 | MC |
| SRR5126157 | root | "mock,7_days" | 2.23 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.93 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.53 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.85 | MC |
| SRR5126165 | root | "mock,14_days" | 4.61 | MC |
| SRR5126167 | root | "mock,14_days" | 0.67 | MC |
| SRR5126169 | root | "mock,14_days" | 3.19 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.27 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.00 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.39 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.28 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.93 | MC |
| SRR1213694 | root | wt | 0.61 | MC |
| SRR1213695 | root | wt | 0.39 | MC |
| SRR4947478 | root | control | 0.74 | MC |
| SRR4947479 | root | control | 1.13 | MC |
| SRR4947480 | root | control | 1.88 | MC |
| SRR4947481 | root | control | 1.09 | MC |
| SRR4947482 | root | Al | 0.78 | MC |
| SRR4947483 | root | Al | 1.69 | MC |
| SRR4947485 | root | Al | 1.17 | MC |
| SRR4947487 | root | control | 1.81 | MC |
| SRR4947488 | root | control | 1.05 | MC |
| SRR4947490 | root | Al | 1.47 | MC |
| SRR4947491 | root | Al | 1.07 | MC |
| SRR4947492 | root | Al | 1.61 | MC |
| SRR4947494 | root | control | 1.40 | MC |
| SRR4947497 | root | control | 0.96 | MC |
| SRR4947498 | root | Al | 0.67 | MC |
| SRR4947499 | root | Al | 1.39 | MC |
| SRR4947500 | root | Al | 0.85 | MC |
| SRR4947501 | root | Al | 1.07 | MC |
| SRR4947502 | root | control | 2.32 | MC |
| SRR4947503 | root | control | 1.32 | MC |
| SRR4947504 | root | control | 0.54 | MC |
| SRR4947505 | root | control | 1.07 | MC |
| SRR4947506 | root | Al | 0.96 | MC |
| SRR4947507 | root | Al | 1.36 | MC |
| SRR4947508 | root | Al | 0.77 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.09 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.84 | MC |
| SRR6502094 | root | control | 3.19 | MC |
| SRR6502095 | root | control | 3.06 | MC |
| SRR6502096 | root | control | 2.84 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.75 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.50 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.37 | MC |
| SRR6502106 | root | control | 3.08 | MC |
| SRR6502107 | root | control | 2.37 | MC |
| SRR6502108 | root | control | 3.07 | MC |
| SRR2154086 | seedling | wt | 0.86 | MC |
| SRR2154082 | seedling | wt | 0.99 | MC |
| SRR2154084 | seedling | wt | 0.87 | MC |
| SRR2154085 | seedling | wt | 0.43 | MC |
| SRR2154087 | seedling | wt | 0.37 | MC |
| SRR3098741 | seedling | wt | 0.36 | MC |
| SRR3098742 | seedling | wt | 0.38 | MC |
| SRR3098743 | seedling | wt | 0.42 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.82 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.64 | MC |
| SRR1944583 | seedling | no_treatment | 0.78 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.50 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.63 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.94 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.38 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.71 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.93 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.97 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.11 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.00 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.28 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.89 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.69 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.93 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.39 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.80 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.60 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.84 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.93 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.68 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.44 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.33 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.38 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.10 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.66 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.59 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.36 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.84 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.33 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.36 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.78 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.51 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.19 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.71 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 2.96 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.58 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.01 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.38 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.01 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.15 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.23 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.49 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.54 | MC |