| SRR358795 | callus | wt | 1.15 | MC |
| SRR358796 | callus | wt | 1.11 | MC |
| SRR358798 | callus | wt | 2.31 | MC |
| SRR6320473 | carpel | wt | 1.53 | MC |
| SRR6320498 | carpel | wt | 2.01 | MC |
| SRR5560727 | caryopsis | wild_type | 0.27 | MC |
| SRR5560728 | caryopsis | wild_type | 0.74 | MC |
| SRR5560729 | caryopsis | wild_type | 0.62 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.52 | MC |
| SRR4947495 | root | control | 3.90 | MC |
| SRR7265401 | coleoptile | 2dA | 0.34 | MC |
| SRR7265402 | coleoptile | 2dA | 0.40 | MC |
| SRR7265407 | coleoptile | 3dA | 0.37 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.69 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.63 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.61 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.68 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.46 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.02 | MC |
| SRR1213691 | flower | wt | 0.47 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.42 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.42 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.50 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.53 | MC |
| SRR504365 | leaf | wt | 0.57 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.25 | MC |
| SRR5856927 | leaf | control | 2.18 | MC |
| SRR5856928 | leaf | control | 0.60 | MC |
| SRR5856929 | leaf | control | 1.05 | MC |
| SRR5856931 | leaf | salt | 1.68 | MC |
| SRR5856933 | leaf | control | 1.21 | MC |
| SRR5856934 | leaf | control | 0.67 | MC |
| SRR5856935 | leaf | control | 1.38 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 4.73 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 5.43 | MC |
| SRR6168973 | leaf | none (control) | 0.39 | MC |
| SRR6168974 | leaf | none (control) | 0.69 | MC |
| SRR6168975 | leaf | none (control) | 0.66 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.66 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.64 | MC |
| SRR5110430 | panicle | Dawn | 2.85 | MC |
| SRR5110431 | panicle | Dawn | 1.80 | MC |
| SRR5110432 | panicle | Dawn | 1.87 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 2.96 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 2.34 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.70 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.05 | MC |
| SRR5110437 | panicle | Dawn + 7h | 2.83 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.13 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.72 | MC |
| SRR5110440 | panicle | Dawn + 7h | 2.78 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 3.08 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 3.44 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 2.71 | MC |
| SRR5110445 | panicle | Dusk | 2.31 | MC |
| SRR5110446 | panicle | Dusk | 3.44 | MC |
| SRR5110447 | panicle | Dusk | 3.87 | MC |
| SRR5110448 | panicle | Dusk | 2.10 | MC |
| SRR5110449 | panicle | Dawn + 14h | 2.21 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.98 | MC |
| SRR5110451 | panicle | Dawn + 14h | 3.22 | MC |
| SRR5110452 | panicle | Dawn + 14h | 3.65 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.97 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.73 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.48 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.69 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.98 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.89 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.67 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.36 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.54 | MC |
| SRR5126147 | root | "mock,1_day" | 0.52 | MC |
| SRR5126148 | root | "mock,1_day" | 0.66 | MC |
| SRR5126155 | root | "mock,7_days" | 0.31 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.44 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.33 | MC |
| SRR4947478 | root | control | 2.64 | MC |
| SRR4947482 | root | Al | 3.47 | MC |
| SRR4947490 | root | Al | 3.99 | MC |
| SRR4947494 | root | control | 3.18 | MC |
| SRR4947501 | root | Al | 0.53 | MC |
| SRR4947502 | root | control | 2.22 | MC |
| SRR4947507 | root | Al | 3.95 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.13 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.87 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.57 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.97 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.20 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.81 | MC |
| SRR1740428 | root_meristematic_zone | wt | 0.52 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.79 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.21 | MC |
| SRR2154083 | seedling | wt | 0.77 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.48 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.00 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.27 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.40 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.69 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.80 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 0.69 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.93 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 0.75 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.78 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.18 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.82 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.33 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.77 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.06 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.80 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.92 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.80 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.59 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.45 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.59 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.65 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.50 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.44 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.15 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.46 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.02 | MC |