| SRR3745127 | anther | wt | 0.82 | MC |
| SRR358797 | callus | wt | 1.15 | MC |
| SRR5560727 | caryopsis | wild_type | 1.99 | MC |
| SRR5560728 | caryopsis | wild_type | 4.35 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 4.49 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 3.30 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.31 | MC |
| SRR4947495 | root | control | 4.38 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.93 | MC |
| SRR7265401 | coleoptile | 2dA | 3.50 | MC |
| SRR7265402 | coleoptile | 2dA | 3.47 | MC |
| SRR7265403 | coleoptile | 2dN | 4.01 | MC |
| SRR7265404 | coleoptile | 2dN | 3.16 | MC |
| SRR7265405 | coleoptile | 2dN | 1.45 | MC |
| SRR7265406 | coleoptile | 3dA | 1.34 | MC |
| SRR7265407 | coleoptile | 3dA | 0.87 | MC |
| SRR7265408 | coleoptile | 3dA | 1.18 | MC |
| SRR7265409 | coleoptile | 3dN | 4.05 | MC |
| SRR7265413 | coleoptile | 4dA | 2.02 | MC |
| SRR7265415 | coleoptile | 4dN | 1.66 | MC |
| SRR7265416 | coleoptile | 4dN | 2.99 | MC |
| SRR7265417 | coleoptile | 4dN | 3.80 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.58 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.43 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.28 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.75 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.02 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.81 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.16 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.57 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 4.12 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 2.27 | MC |
| SRR7265388 | embryo | 12hA | 1.16 | MC |
| SRR7265389 | embryo | 12hA | 1.21 | MC |
| SRR7265390 | embryo | 12hA | 0.93 | MC |
| SRR7265393 | embryo | 12hN | 1.00 | MC |
| SRR7265394 | embryo | 24hA | 1.92 | MC |
| SRR7265395 | embryo | 24hA | 3.45 | MC |
| SRR7265396 | embryo | 24hA | 2.31 | MC |
| SRR7265397 | embryo | 24hN | 4.29 | MC |
| SRR7265398 | embryo | 24hN | 2.49 | MC |
| SRR7265399 | embryo | 24hN | 2.31 | MC |
| SRR2338869 | endosprem | high_temperature | 1.96 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.53 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.03 | MC |
| SRR1213691 | flower | wt | 1.68 | MC |
| SRR8240824 | leaf | wild_type | 1.06 | MC |
| SRR8240825 | leaf | wild_type | 1.71 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 3.84 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 2.80 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 3.03 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 3.88 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.53 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.21 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.96 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.12 | MC |
| SRR6502088 | leaf | control | 0.58 | MC |
| SRR5856927 | leaf | control | 0.54 | MC |
| SRR5856929 | leaf | control | 0.85 | MC |
| SRR5856933 | leaf | control | 1.32 | MC |
| SRR5856934 | leaf | control | 1.08 | MC |
| SRR5856935 | leaf | control | 1.72 | MC |
| SRR5856936 | leaf | salt | 0.46 | MC |
| SRR5856938 | leaf | salt | 0.51 | MC |
| SRR6168973 | leaf | none (control) | 1.73 | MC |
| SRR6168974 | leaf | none (control) | 4.49 | MC |
| SRR6168975 | leaf | none (control) | 0.97 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 2.86 | MC |
| SRR6168981 | leaf | none (control) | 0.40 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.16 | MC |
| SRR8582889 | panicle | AM | 0.28 | MC |
| SRR8582890 | panicle | AM | 0.27 | MC |
| SRR5110431 | panicle | Dawn | 0.67 | MC |
| SRR5110432 | panicle | Dawn | 2.17 | MC |
| SRR4947496 | root | control | 1.22 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 0.54 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.58 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.60 | MC |
| SRR5110448 | panicle | Dusk | 1.23 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.13 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.74 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.98 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.66 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.86 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.40 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.25 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.65 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.56 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 3.53 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 2.78 | MC |
| SRR5126147 | root | "mock,1_day" | 3.48 | MC |
| SRR5126148 | root | "mock,1_day" | 2.89 | MC |
| SRR5126149 | root | "mock,1_day" | 1.53 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.51 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.34 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.02 | MC |
| SRR5126153 | root | "mock,7_days" | 3.77 | MC |
| SRR5126157 | root | "mock,7_days" | 2.53 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.99 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.94 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 3.51 | MC |
| SRR5126165 | root | "mock,14_days" | 2.77 | MC |
| SRR5126167 | root | "mock,14_days" | 0.79 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.05 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.55 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.76 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.74 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.89 | MC |
| SRR4947478 | root | control | 2.61 | MC |
| SRR4947479 | root | control | 2.77 | MC |
| SRR4947480 | root | control | 1.69 | MC |
| SRR4947481 | root | control | 2.78 | MC |
| SRR4947482 | root | Al | 1.57 | MC |
| SRR4947483 | root | Al | 2.55 | MC |
| SRR4947484 | root | Al | 2.30 | MC |
| SRR4947485 | root | Al | 1.02 | MC |
| SRR4947488 | root | control | 1.81 | MC |
| SRR4947489 | root | control | 2.31 | MC |
| SRR4947490 | root | Al | 2.58 | MC |
| SRR4947491 | root | Al | 2.11 | MC |
| SRR4947492 | root | Al | 2.39 | MC |
| SRR4947493 | root | Al | 3.18 | MC |
| SRR4947494 | root | control | 2.57 | MC |
| SRR4947497 | root | control | 2.64 | MC |
| SRR4947498 | root | Al | 5.78 | MC |
| SRR4947499 | root | Al | 4.01 | MC |
| SRR4947500 | root | Al | 2.61 | MC |
| SRR4947501 | root | Al | 3.35 | MC |
| SRR4947502 | root | control | 3.35 | MC |
| SRR4947503 | root | control | 1.92 | MC |
| SRR4947504 | root | control | 1.47 | MC |
| SRR4947505 | root | control | 1.94 | MC |
| SRR4947507 | root | Al | 2.58 | MC |
| SRR4947508 | root | Al | 0.55 | MC |
| SRR4947509 | root | Al | 2.06 | MC |
| SRR6502091 | root | 100 mM NaCl | 4.07 | MC |
| SRR1740431 | root_elongation_zone | wt | 3.83 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.00 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.03 | MC |
| SRR6441554 | seedling | wild_type | 0.38 | MC |
| SRR6441555 | seedling | wild_type | 1.04 | MC |
| SRR2154086 | seedling | wt | 0.59 | MC |
| SRR2154082 | seedling | wt | 1.40 | MC |
| SRR2154083 | seedling | wt | 2.26 | MC |
| SRR2154084 | seedling | wt | 2.40 | MC |
| SRR2154085 | seedling | wt | 0.74 | MC |
| SRR2154087 | seedling | wt | 1.54 | MC |
| SRR3098741 | seedling | wt | 1.07 | MC |
| SRR3098742 | seedling | wt | 0.80 | MC |
| SRR3098743 | seedling | wt | 0.70 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.33 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.31 | MC |
| SRR1944583 | seedling | no_treatment | 0.67 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.87 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.40 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.45 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.86 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.59 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.92 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.92 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.79 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.40 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.72 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.99 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.19 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.74 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.84 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.78 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.19 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.39 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.22 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.75 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.54 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.74 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.65 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.74 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.91 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.23 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.19 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.83 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.36 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 3.24 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.17 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.81 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.63 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.39 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.53 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.61 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.93 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.49 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.50 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 2.11 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.18 | MC |