| SRR4457250 | 2nd_leaf | DAH4 | 0.98 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.12 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.76 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.64 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.65 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.72 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.50 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.56 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.51 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.49 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.72 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.89 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.73 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 0.64 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 0.85 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.88 | MC |
| SRR5560729 | caryopsis | wild_type | 0.50 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.65 | MC |
| SRR4947495 | root | control | 1.76 | MC |
| SRR7265401 | coleoptile | 2dA | 0.58 | MC |
| SRR7265402 | coleoptile | 2dA | 0.42 | MC |
| SRR7265406 | coleoptile | 3dA | 0.51 | MC |
| SRR7265407 | coleoptile | 3dA | 0.39 | MC |
| SRR7265414 | coleoptile | 4dA | 0.56 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.62 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.44 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.42 | MC |
| SRR7265378 | embryo | 1hA | 0.42 | MC |
| SRR7265379 | embryo | 1hN | 0.26 | MC |
| SRR7265381 | embryo | 1hN | 0.36 | MC |
| SRR7265387 | embryo | 3hN | 0.32 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.75 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.38 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.06 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.73 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.33 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.40 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.86 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.81 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.86 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.35 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.02 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.59 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.67 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.89 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.36 | MC |
| SRR4457247 | flag_leaf | DAH44 | 0.83 | MC |
| SRR4457248 | flag_leaf | DAH44 | 2.77 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.42 | MC |
| SRR1213691 | flower | wt | 0.57 | MC |
| SRR8060835 | leaf | wild_type | 0.25 | MC |
| SRR8060837 | leaf | wild_type | 0.42 | MC |
| SRR8240824 | leaf | wild_type | 0.79 | MC |
| SRR8240825 | leaf | wild_type | 0.39 | MC |
| SRR8240826 | leaf | wild_type | 0.77 | MC |
| SRR8240818 | leaf | wild_type | 1.30 | MC |
| SRR8240819 | leaf | wild_type | 0.71 | MC |
| SRR8240820 | leaf | wild_type | 0.66 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.38 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.64 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.38 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.51 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.32 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.21 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.55 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.36 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.42 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.64 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.58 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.58 | MC |
| SRR1761528 | leaf | drought | 0.58 | MC |
| SRR504365 | leaf | wt | 0.22 | MC |
| SRR6417968 | leaf | H2O_control | 0.39 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.20 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.49 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.21 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.42 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.72 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.33 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.46 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.27 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.35 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.31 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.23 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.81 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.70 | MC |
| SRR1213692 | leaf | wt | 0.84 | MC |
| SRR1213693 | leaf | wt | 0.84 | MC |
| SRR6502090 | leaf | control | 0.35 | MC |
| SRR5856927 | leaf | control | 1.05 | MC |
| SRR5856928 | leaf | control | 1.10 | MC |
| SRR5856929 | leaf | control | 1.65 | MC |
| SRR5856930 | leaf | salt | 0.24 | MC |
| SRR5856931 | leaf | salt | 0.83 | MC |
| SRR5856932 | leaf | salt | 0.44 | MC |
| SRR5856933 | leaf | control | 1.25 | MC |
| SRR5856934 | leaf | control | 1.33 | MC |
| SRR5856935 | leaf | control | 0.98 | MC |
| SRR5856936 | leaf | salt | 0.58 | MC |
| SRR5856937 | leaf | salt | 0.23 | MC |
| SRR5856938 | leaf | salt | 0.32 | MC |
| SRR6168974 | leaf | none (control) | 0.56 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.70 | MC |
| SRR6168979 | leaf | none (control) | 0.59 | MC |
| SRR6168981 | leaf | none (control) | 0.34 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.37 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.74 | MC |
| SRR8582891 | panicle | PM | 0.87 | MC |
| SRR8582893 | panicle | PM | 0.81 | MC |
| SRR4947496 | root | control | 1.77 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.55 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.77 | MC |
| SRR1633182 | panicle | WT | 0.35 | MC |
| SRR1633185 | panicle | WT | 0.61 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.49 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.23 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.15 | MC |
| SRR5126153 | root | "mock,7_days" | 0.97 | MC |
| SRR5126155 | root | "mock,7_days" | 0.71 | MC |
| SRR5126157 | root | "mock,7_days" | 0.66 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.61 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.36 | MC |
| SRR5126169 | root | "mock,14_days" | 0.41 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.41 | MC |
| SRR1213694 | root | wt | 0.25 | MC |
| SRR1213695 | root | wt | 0.99 | MC |
| SRR4947479 | root | control | 0.96 | MC |
| SRR4947480 | root | control | 1.62 | MC |
| SRR4947481 | root | control | 1.16 | MC |
| SRR4947482 | root | Al | 1.21 | MC |
| SRR4947483 | root | Al | 0.81 | MC |
| SRR4947484 | root | Al | 1.19 | MC |
| SRR4947487 | root | control | 1.19 | MC |
| SRR4947488 | root | control | 1.49 | MC |
| SRR4947489 | root | control | 1.35 | MC |
| SRR4947497 | root | control | 1.10 | MC |
| SRR4947498 | root | Al | 0.80 | MC |
| SRR4947499 | root | Al | 0.80 | MC |
| SRR4947500 | root | Al | 1.37 | MC |
| SRR4947502 | root | control | 1.79 | MC |
| SRR4947504 | root | control | 1.48 | MC |
| SRR4947505 | root | control | 1.55 | MC |
| SRR4947507 | root | Al | 0.85 | MC |
| SRR4947508 | root | Al | 1.44 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.94 | MC |
| SRR6502096 | root | control | 0.56 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.40 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.61 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.79 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.73 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.48 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.41 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.38 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.82 | MC |
| SRR2154086 | seedling | wt | 0.64 | MC |
| SRR2154085 | seedling | wt | 0.82 | MC |
| SRR2154087 | seedling | wt | 0.47 | MC |
| SRR3098741 | seedling | wt | 0.43 | MC |
| SRR3098742 | seedling | wt | 0.23 | MC |
| SRR3098743 | seedling | wt | 0.25 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.44 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.29 | MC |
| SRR358791 | seedling | wt | 1.50 | MC |
| SRR358792 | seedling | wt | 0.89 | MC |
| SRR358793 | seedling | wt | 0.90 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 3.26 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.76 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.23 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.11 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.26 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.20 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.31 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.81 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.40 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.38 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.49 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.48 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.60 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.52 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.52 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.58 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.48 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.34 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.37 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.88 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.53 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.63 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.50 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.99 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.34 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.68 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 2.63 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 2.35 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 2.59 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.28 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 2.04 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 3.11 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 2.49 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.97 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.70 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 2.10 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 2.08 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.44 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 2.90 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 2.88 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 4.05 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 2.32 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.78 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 2.81 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.97 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 3.96 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.58 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.19 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.48 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.79 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.91 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.08 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.80 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.99 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.94 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.00 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.49 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.31 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.24 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.23 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.18 | MC |