| SRR358797 | callus | wt | 1.12 | MC |
| SRR358798 | callus | wt | 0.88 | MC |
| SRR6320473 | carpel | wt | 1.35 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.72 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.65 | MC |
| SRR4947495 | root | control | 0.68 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.36 | MC |
| SRR7265377 | embryo | 1hA | 0.36 | MC |
| SRR7265378 | embryo | 1hA | 0.47 | MC |
| SRR7265380 | embryo | 1hN | 0.39 | MC |
| SRR7265381 | embryo | 1hN | 0.25 | MC |
| SRR7265382 | embryo | 3hA | 1.47 | MC |
| SRR7265383 | embryo | 3hA | 1.22 | MC |
| SRR7265384 | embryo | 3hA | 1.51 | MC |
| SRR7265385 | embryo | 3hN | 0.86 | MC |
| SRR7265386 | embryo | 3hN | 0.54 | MC |
| SRR7265387 | embryo | 3hN | 0.63 | MC |
| SRR7265393 | embryo | 12hN | 0.50 | MC |
| SRR2338868 | endosprem | high_temperature | 1.46 | MC |
| SRR2338869 | endosprem | high_temperature | 1.18 | MC |
| SRR8240824 | leaf | wild_type | 0.43 | MC |
| SRR8240825 | leaf | wild_type | 0.75 | MC |
| SRR8240826 | leaf | wild_type | 0.25 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.59 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.74 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.57 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.51 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.30 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.96 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.45 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.33 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.39 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.49 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.42 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.18 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.42 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.44 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.65 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.39 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.00 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.62 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.42 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.71 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.70 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.45 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.58 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.68 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.72 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.44 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.59 | MC |
| SRR1761528 | leaf | drought | 0.69 | MC |
| SRR1761529 | leaf | drought | 0.73 | MC |
| SRR1761530 | leaf | control | 0.45 | MC |
| SRR1761531 | leaf | control | 0.59 | MC |
| SRR504365 | leaf | wt | 1.41 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.36 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.42 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.40 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.49 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.37 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.34 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.43 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.43 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.39 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.35 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.39 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.30 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.57 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.55 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.46 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.31 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.28 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.44 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.30 | MC |
| SRR1213692 | leaf | wt | 1.20 | MC |
| SRR1213693 | leaf | wt | 0.94 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.39 | MC |
| SRR5856927 | leaf | control | 0.39 | MC |
| SRR5856928 | leaf | control | 0.39 | MC |
| SRR5856929 | leaf | control | 0.40 | MC |
| SRR5856930 | leaf | salt | 0.63 | MC |
| SRR5856931 | leaf | salt | 0.49 | MC |
| SRR5856932 | leaf | salt | 0.55 | MC |
| SRR5856934 | leaf | control | 0.35 | MC |
| SRR5856935 | leaf | control | 0.34 | MC |
| SRR5856936 | leaf | salt | 0.48 | MC |
| SRR5856937 | leaf | salt | 0.65 | MC |
| SRR5856938 | leaf | salt | 0.94 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 1.14 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.28 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.22 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.26 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.40 | MC |
| SRR8582890 | panicle | AM | 0.40 | MC |
| SRR8582891 | panicle | PM | 0.54 | MC |
| SRR8582893 | panicle | PM | 0.40 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.40 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.28 | MC |
| SRR1633182 | panicle | WT | 0.28 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.53 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.46 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.35 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.55 | MC |
| SRR5126147 | root | "mock,1_day" | 0.31 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.49 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.40 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.40 | MC |
| SRR5126153 | root | "mock,7_days" | 0.53 | MC |
| SRR5126155 | root | "mock,7_days" | 0.90 | MC |
| SRR5126157 | root | "mock,7_days" | 0.85 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.67 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.74 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.63 | MC |
| SRR5126165 | root | "mock,14_days" | 0.58 | MC |
| SRR5126167 | root | "mock,14_days" | 0.55 | MC |
| SRR5126169 | root | "mock,14_days" | 0.75 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.32 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.59 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.44 | MC |
| SRR1213694 | root | wt | 0.23 | MC |
| SRR1213695 | root | wt | 1.59 | MC |
| SRR4947478 | root | control | 1.89 | MC |
| SRR4947479 | root | control | 0.94 | MC |
| SRR4947482 | root | Al | 1.42 | MC |
| SRR4947483 | root | Al | 1.76 | MC |
| SRR4947487 | root | control | 1.86 | MC |
| SRR4947490 | root | Al | 2.16 | MC |
| SRR4947494 | root | control | 1.65 | MC |
| SRR4947499 | root | Al | 0.78 | MC |
| SRR4947502 | root | control | 0.88 | MC |
| SRR4947503 | root | control | 1.67 | MC |
| SRR4947506 | root | Al | 2.80 | MC |
| SRR6441554 | seedling | wild_type | 0.22 | MC |
| SRR6441555 | seedling | wild_type | 0.31 | MC |
| SRR2154086 | seedling | wt | 0.58 | MC |
| SRR2154083 | seedling | wt | 0.49 | MC |
| SRR2154084 | seedling | wt | 1.05 | MC |
| SRR2154087 | seedling | wt | 0.68 | MC |
| SRR3098741 | seedling | wt | 1.80 | MC |
| SRR3098742 | seedling | wt | 0.82 | MC |
| SRR3098743 | seedling | wt | 0.69 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.42 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.41 | MC |
| SRR358791 | seedling | wt | 1.03 | MC |
| SRR358792 | seedling | wt | 1.08 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.79 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.40 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.98 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 12.72 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.29 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.77 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.97 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.55 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.93 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.89 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.21 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.32 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.60 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.44 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.36 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.46 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.42 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.64 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.68 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.31 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.37 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.89 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.96 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.96 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.74 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.29 | MC |