| SRR5560727 | caryopsis | wild_type | 0.95 | MC |
| SRR5560728 | caryopsis | wild_type | 1.41 | MC |
| SRR5560729 | caryopsis | wild_type | 1.10 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.84 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.28 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.53 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.40 | MC |
| SRR7265406 | coleoptile | 3dA | 0.30 | MC |
| SRR7265407 | coleoptile | 3dA | 0.31 | MC |
| SRR7265412 | coleoptile | 4dA | 0.64 | MC |
| SRR7265414 | coleoptile | 4dA | 0.76 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.42 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.46 | MC |
| SRR976168 | flag_leaf | wild_type | 0.44 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.68 | MC |
| SRR1213691 | flower | wt | 1.12 | MC |
| SRR8240824 | leaf | wild_type | 0.36 | MC |
| SRR8240825 | leaf | wild_type | 0.28 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.82 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.49 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.12 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.50 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.21 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.42 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.35 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.44 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.74 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.46 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.46 | MC |
| SRR1761529 | leaf | drought | 0.46 | MC |
| SRR504365 | leaf | wt | 0.26 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.29 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.59 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.72 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.31 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.52 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.22 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.51 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.64 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.61 | MC |
| SRR1213693 | leaf | wt | 0.38 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.59 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.86 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.82 | MC |
| SRR6502088 | leaf | control | 0.56 | MC |
| SRR6502089 | leaf | control | 0.50 | MC |
| SRR6502090 | leaf | control | 0.32 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.26 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.25 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.38 | MC |
| SRR6502100 | leaf | control | 0.40 | MC |
| SRR6502101 | leaf | control | 0.35 | MC |
| SRR6502102 | leaf | control | 0.42 | MC |
| SRR6168973 | leaf | none (control) | 1.08 | MC |
| SRR6168974 | leaf | none (control) | 1.01 | MC |
| SRR6168975 | leaf | none (control) | 1.71 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.93 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.88 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.76 | MC |
| SRR6168979 | leaf | none (control) | 0.36 | MC |
| SRR6168980 | leaf | none (control) | 0.61 | MC |
| SRR6168981 | leaf | none (control) | 0.58 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.52 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.34 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.52 | MC |
| SRR8582888 | panicle | AM | 0.47 | MC |
| SRR8582889 | panicle | AM | 0.34 | MC |
| SRR8582891 | panicle | PM | 0.62 | MC |
| SRR8582893 | panicle | PM | 0.67 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.33 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.32 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.38 | MC |
| SRR5126148 | root | "mock,1_day" | 0.42 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.38 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.63 | MC |
| SRR5126153 | root | "mock,7_days" | 0.29 | MC |
| SRR5126157 | root | "mock,7_days" | 0.50 | MC |
| SRR5126167 | root | "mock,14_days" | 0.45 | MC |
| SRR5126169 | root | "mock,14_days" | 0.30 | MC |
| SRR1213694 | root | wt | 0.33 | MC |
| SRR1213695 | root | wt | 0.16 | MC |
| SRR4947480 | root | control | 0.72 | MC |
| SRR4947492 | root | Al | 0.77 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.34 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.44 | MC |
| SRR6502094 | root | control | 0.66 | MC |
| SRR6502095 | root | control | 0.49 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.51 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.43 | MC |
| SRR6502106 | root | control | 0.53 | MC |
| SRR6502107 | root | control | 0.57 | MC |
| SRR6502108 | root | control | 0.42 | MC |
| SRR6441554 | seedling | wild_type | 0.61 | MC |
| SRR2154086 | seedling | wt | 0.45 | MC |
| SRR2154085 | seedling | wt | 0.50 | MC |
| SRR2154087 | seedling | wt | 0.79 | MC |
| SRR3098741 | seedling | wt | 0.26 | MC |
| SRR3098742 | seedling | wt | 0.26 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.71 | MC |
| SRR1944583 | seedling | no_treatment | 0.61 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.92 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.86 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.73 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 13.19 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.13 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.46 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.50 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.73 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.73 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.32 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.32 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.24 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.18 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.55 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.51 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.70 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.44 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.48 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.61 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.73 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.93 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.78 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.60 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.39 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.56 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.41 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.32 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.35 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.62 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.28 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.86 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.75 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.27 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.42 | MC |