| SRR4457252 | 2nd_leaf | DAH12 | 0.28 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.89 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.30 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.72 | MC |
| SRR5560727 | caryopsis | wild_type | 0.39 | MC |
| SRR5560728 | caryopsis | wild_type | 0.45 | MC |
| SRR5560729 | caryopsis | wild_type | 0.71 | MC |
| SRR7265400 | coleoptile | 2dA | 0.46 | MC |
| SRR7265401 | coleoptile | 2dA | 1.15 | MC |
| SRR7265402 | coleoptile | 2dA | 0.37 | MC |
| SRR7265403 | coleoptile | 2dN | 1.33 | MC |
| SRR7265404 | coleoptile | 2dN | 0.86 | MC |
| SRR7265405 | coleoptile | 2dN | 1.69 | MC |
| SRR7265409 | coleoptile | 3dN | 1.22 | MC |
| SRR7265410 | coleoptile | 3dN | 0.49 | MC |
| SRR7265411 | coleoptile | 3dN | 0.90 | MC |
| SRR7265413 | coleoptile | 4dA | 0.57 | MC |
| SRR7265415 | coleoptile | 4dN | 0.72 | MC |
| SRR7265416 | coleoptile | 4dN | 0.60 | MC |
| SRR7265417 | coleoptile | 4dN | 0.49 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.44 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.89 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.25 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.56 | MC |
| SRR7265376 | embryo | 1hA | 2.32 | MC |
| SRR7265377 | embryo | 1hA | 2.67 | MC |
| SRR7265378 | embryo | 1hA | 1.37 | MC |
| SRR7265379 | embryo | 1hN | 1.70 | MC |
| SRR7265380 | embryo | 1hN | 2.59 | MC |
| SRR7265381 | embryo | 1hN | 1.56 | MC |
| SRR7265382 | embryo | 3hA | 2.45 | MC |
| SRR7265383 | embryo | 3hA | 1.90 | MC |
| SRR7265384 | embryo | 3hA | 3.00 | MC |
| SRR7265385 | embryo | 3hN | 2.28 | MC |
| SRR7265386 | embryo | 3hN | 2.17 | MC |
| SRR7265387 | embryo | 3hN | 1.17 | MC |
| SRR7265388 | embryo | 12hA | 0.56 | MC |
| SRR7265389 | embryo | 12hA | 2.40 | MC |
| SRR7265390 | embryo | 12hA | 0.60 | MC |
| SRR7265391 | embryo | 12hN | 1.26 | MC |
| SRR7265392 | embryo | 12hN | 1.16 | MC |
| SRR7265393 | embryo | 12hN | 0.86 | MC |
| SRR7265395 | embryo | 24hA | 0.71 | MC |
| SRR7265396 | embryo | 24hA | 0.49 | MC |
| SRR7265397 | embryo | 24hN | 1.28 | MC |
| SRR7265398 | embryo | 24hN | 0.98 | MC |
| SRR7265399 | embryo | 24hN | 1.14 | MC |
| SRR2338866 | endosprem | control | 1.78 | MC |
| SRR2338868 | endosprem | high_temperature | 2.53 | MC |
| SRR2338869 | endosprem | high_temperature | 2.23 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.24 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.34 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.49 | MC |
| SRR1213691 | flower | wt | 0.66 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.62 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.82 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.91 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.76 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.80 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.20 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.13 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.00 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.82 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.58 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.10 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 0.90 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.67 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.07 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.82 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.45 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.81 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.04 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.11 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.69 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.07 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.13 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.70 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.86 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.80 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.59 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.01 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.71 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.01 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.71 | MC |
| SRR1761528 | leaf | drought | 1.01 | MC |
| SRR1761529 | leaf | drought | 0.71 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.39 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.48 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.26 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.84 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.66 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.23 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.39 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.99 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.81 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.71 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.86 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.41 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.53 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.41 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.23 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.24 | MC |
| SRR1213692 | leaf | wt | 0.50 | MC |
| SRR1213693 | leaf | wt | 0.37 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.42 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.41 | MC |
| SRR6168975 | leaf | none (control) | 0.79 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.64 | MC |
| SRR6168979 | leaf | none (control) | 0.87 | MC |
| SRR6168980 | leaf | none (control) | 0.39 | MC |
| SRR6168981 | leaf | none (control) | 1.69 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.55 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.29 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.89 | MC |
| SRR1633182 | panicle | WT | 0.66 | MC |
| SRR1633185 | panicle | WT | 1.27 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.48 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.55 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.36 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.43 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.50 | MC |
| SRR5126155 | root | "mock,7_days" | 0.37 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.42 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.37 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.87 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.44 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.35 | MC |
| SRR1213694 | root | wt | 0.52 | MC |
| SRR1213695 | root | wt | 0.44 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.42 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.28 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.24 | MC |
| SRR6441555 | seedling | wild_type | 0.58 | MC |
| SRR2154086 | seedling | wt | 0.63 | MC |
| SRR2154082 | seedling | wt | 0.44 | MC |
| SRR2154085 | seedling | wt | 0.47 | MC |
| SRR2154087 | seedling | wt | 0.49 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.44 | MC |
| SRR358793 | seedling | wt | 1.26 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.80 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 3.95 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.93 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.35 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.80 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.39 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.24 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.59 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.57 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.79 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.25 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.18 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.36 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.39 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.32 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.36 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.73 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.80 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.56 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.81 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.88 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.00 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.93 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.66 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 0.72 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 0.66 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.83 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.74 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 0.66 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.32 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.97 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 0.94 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.14 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.05 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 0.78 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.03 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.32 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.28 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.48 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.58 | MC |