| SRR4457249 | 2nd_leaf | DAH4 | 0.98 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.89 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.90 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 1.04 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.71 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.77 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.12 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.74 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.61 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.50 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.93 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.05 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 0.94 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.15 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.72 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.56 | MC |
| SRR5560727 | caryopsis | wild_type | 1.14 | MC |
| SRR5560728 | caryopsis | wild_type | 0.80 | MC |
| SRR5560729 | caryopsis | wild_type | 1.68 | MC |
| SRR7265400 | coleoptile | 2dA | 1.10 | MC |
| SRR7265401 | coleoptile | 2dA | 0.32 | MC |
| SRR7265402 | coleoptile | 2dA | 0.84 | MC |
| SRR7265406 | coleoptile | 3dA | 0.39 | MC |
| SRR7265407 | coleoptile | 3dA | 0.55 | MC |
| SRR7265412 | coleoptile | 4dA | 1.17 | MC |
| SRR7265413 | coleoptile | 4dA | 1.52 | MC |
| SRR7265414 | coleoptile | 4dA | 2.57 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.10 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 2.06 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.12 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.04 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.34 | MC |
| SRR7265394 | embryo | 24hA | 0.75 | MC |
| SRR7265395 | embryo | 24hA | 0.61 | MC |
| SRR7265396 | embryo | 24hA | 0.57 | MC |
| SRR2338868 | endosprem | high_temperature | 0.63 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.64 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.49 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.03 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.90 | MC |
| SRR4457235 | flag_leaf | DAH12 | 2.48 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.68 | MC |
| SRR4457237 | flag_leaf | DAH20 | 2.69 | MC |
| SRR4457238 | flag_leaf | DAH20 | 2.22 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.82 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.00 | MC |
| SRR4457241 | flag_leaf | DAH28 | 2.22 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.46 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.36 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.88 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.59 | MC |
| SRR4457247 | flag_leaf | DAH44 | 0.67 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.34 | MC |
| SRR8060835 | leaf | wild_type | 0.76 | MC |
| SRR8060836 | leaf | wild_type | 1.30 | MC |
| SRR8060837 | leaf | wild_type | 2.00 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.38 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.61 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.26 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.37 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.53 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.74 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.42 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.49 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.96 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.55 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.78 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.42 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.83 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.13 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.64 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.77 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.08 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.82 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.57 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.07 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.30 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.01 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.17 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.15 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.76 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.26 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.19 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.52 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.64 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 2.54 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 3.02 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 2.02 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 2.54 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 3.02 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 2.02 | MC |
| SRR1761528 | leaf | drought | 2.54 | MC |
| SRR1761529 | leaf | drought | 3.02 | MC |
| SRR1761531 | leaf | control | 2.02 | MC |
| SRR504365 | leaf | wt | 1.07 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.38 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.54 | MC |
| SRR6417967 | leaf | H2O_control | 1.06 | MC |
| SRR6417968 | leaf | H2O_control | 0.57 | MC |
| SRR6417969 | leaf | H2O_control | 1.74 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.90 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.70 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.60 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.14 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.95 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.75 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 2.50 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.33 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.96 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.78 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.74 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.67 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.91 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.49 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.03 | MC |
| SRR1213692 | leaf | wt | 3.10 | MC |
| SRR1213693 | leaf | wt | 2.70 | MC |
| SRR5856927 | leaf | control | 0.69 | MC |
| SRR5856928 | leaf | control | 0.26 | MC |
| SRR5856929 | leaf | control | 0.46 | MC |
| SRR5856930 | leaf | salt | 0.22 | MC |
| SRR5856932 | leaf | salt | 0.45 | MC |
| SRR5856933 | leaf | control | 0.33 | MC |
| SRR5856934 | leaf | control | 0.71 | MC |
| SRR5856935 | leaf | control | 0.59 | MC |
| SRR5856936 | leaf | salt | 0.25 | MC |
| SRR5856937 | leaf | salt | 0.30 | MC |
| SRR5856938 | leaf | salt | 0.32 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 4.97 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 4.08 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 7.31 | MC |
| SRR6168975 | leaf | none (control) | 0.68 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.46 | MC |
| SRR6168979 | leaf | none (control) | 0.94 | MC |
| SRR6168981 | leaf | none (control) | 0.59 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.38 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.97 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.37 | MC |
| SRR8582889 | panicle | AM | 0.20 | MC |
| SRR8582891 | panicle | PM | 1.93 | MC |
| SRR8582892 | panicle | PM | 0.95 | MC |
| SRR8582893 | panicle | PM | 0.82 | MC |
| SRR5110430 | panicle | Dawn | 1.42 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.79 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.21 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.18 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.04 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 2.17 | MC |
| SRR5110446 | panicle | Dusk | 0.98 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.81 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.74 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.00 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.52 | MC |
| SRR5126153 | root | "mock,7_days" | 0.34 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.59 | MC |
| SRR5126167 | root | "mock,14_days" | 0.80 | MC |
| SRR5126169 | root | "mock,14_days" | 0.53 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.43 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.55 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.44 | MC |
| SRR1213694 | root | wt | 1.02 | MC |
| SRR4947481 | root | control | 0.91 | MC |
| SRR4947483 | root | Al | 1.11 | MC |
| SRR4947498 | root | Al | 1.16 | MC |
| SRR4947499 | root | Al | 1.43 | MC |
| SRR4947502 | root | control | 0.59 | MC |
| SRR4947507 | root | Al | 1.30 | MC |
| SRR4947509 | root | Al | 1.31 | MC |
| SRR6441554 | seedling | wild_type | 0.42 | MC |
| SRR6441555 | seedling | wild_type | 0.70 | MC |
| SRR2154086 | seedling | wt | 2.07 | MC |
| SRR2154082 | seedling | wt | 1.88 | MC |
| SRR2154083 | seedling | wt | 0.47 | MC |
| SRR2154084 | seedling | wt | 0.70 | MC |
| SRR2154085 | seedling | wt | 2.10 | MC |
| SRR2154087 | seedling | wt | 1.09 | MC |
| SRR3098741 | seedling | wt | 0.71 | MC |
| SRR3098742 | seedling | wt | 0.24 | MC |
| SRR3098743 | seedling | wt | 0.60 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.03 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.06 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.29 | MC |
| SRR358791 | seedling | wt | 1.57 | MC |
| SRR358794 | seedling | wt | 1.90 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.55 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.13 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.55 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.25 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.02 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.26 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 2.98 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.58 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.36 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.64 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.45 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.49 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.38 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.86 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.84 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.95 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.04 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.66 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.66 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.24 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.20 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.43 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.33 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.85 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.86 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.59 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.89 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.96 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.04 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.68 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.01 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.12 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.86 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.17 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.71 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.66 | MC |