| SRR7265378 | embryo | 1hA | 0.32 | MC |
| SRR7265382 | embryo | 3hA | 1.70 | MC |
| SRR7265383 | embryo | 3hA | 0.59 | MC |
| SRR7265384 | embryo | 3hA | 0.75 | MC |
| SRR7265391 | embryo | 12hN | 0.47 | MC |
| SRR2338868 | endosprem | high_temperature | 0.71 | MC |
| SRR1213691 | flower | wt | 1.21 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.25 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.34 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.41 | MC |
| SRR8582889 | panicle | AM | 0.17 | MC |
| SRR4947496 | root | control | 0.52 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.27 | MC |
| SRR1633182 | panicle | WT | 0.79 | MC |
| SRR1633185 | panicle | WT | 0.95 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 6.50 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 2.52 | MC |
| SRR5126147 | root | "mock,1_day" | 0.80 | MC |
| SRR5126148 | root | "mock,1_day" | 1.15 | MC |
| SRR5126149 | root | "mock,1_day" | 0.40 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.41 | MC |
| SRR5126153 | root | "mock,7_days" | 0.45 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.61 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.22 | MC |
| SRR5126165 | root | "mock,14_days" | 0.36 | MC |
| SRR5126167 | root | "mock,14_days" | 0.60 | MC |
| SRR5126169 | root | "mock,14_days" | 0.50 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.88 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.48 | MC |
| SRR1213694 | root | wt | 1.33 | MC |
| SRR1213695 | root | wt | 0.14 | MC |
| SRR4947489 | root | control | 0.45 | MC |
| SRR4947492 | root | Al | 1.94 | MC |
| SRR4947493 | root | Al | 0.86 | MC |
| SRR4947497 | root | control | 0.63 | MC |
| SRR4947500 | root | Al | 2.29 | MC |
| SRR4947501 | root | Al | 2.17 | MC |
| SRR4947504 | root | control | 0.77 | MC |
| SRR4947505 | root | control | 0.67 | MC |
| SRR4947508 | root | Al | 1.19 | MC |
| SRR4947509 | root | Al | 2.47 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.54 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.80 | MC |
| SRR6502094 | root | control | 0.73 | MC |
| SRR6502095 | root | control | 0.40 | MC |
| SRR6502096 | root | control | 1.14 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.41 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.00 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.67 | MC |
| SRR6502106 | root | control | 0.98 | MC |
| SRR6502107 | root | control | 1.03 | MC |
| SRR6502108 | root | control | 1.31 | MC |
| SRR2154083 | seedling | wt | 0.28 | MC |
| SRR2154085 | seedling | wt | 1.20 | MC |
| SRR2154087 | seedling | wt | 0.59 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.05 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.83 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.78 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 12.41 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.61 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.70 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.63 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.02 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.00 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.36 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.49 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.25 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.92 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.51 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.08 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.35 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.56 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.38 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.04 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.57 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.15 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.48 | MC |