| SRR4457249 | 2nd_leaf | DAH4 | 1.07 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.25 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.58 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.37 | MC |
| SRR358795 | callus | wt | 2.34 | MC |
| SRR358796 | callus | wt | 2.89 | MC |
| SRR358797 | callus | wt | 2.82 | MC |
| SRR358798 | callus | wt | 3.03 | MC |
| SRR5560727 | caryopsis | wild_type | 3.95 | MC |
| SRR5560728 | caryopsis | wild_type | 3.09 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 2.19 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.57 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.95 | MC |
| SRR4947495 | root | control | 0.50 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.47 | MC |
| SRR7265409 | coleoptile | 3dN | 0.48 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 3.04 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 2.84 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.36 | MC |
| SRR7265376 | embryo | 1hA | 0.58 | MC |
| SRR7265377 | embryo | 1hA | 0.50 | MC |
| SRR7265378 | embryo | 1hA | 0.26 | MC |
| SRR7265379 | embryo | 1hN | 0.28 | MC |
| SRR7265380 | embryo | 1hN | 0.49 | MC |
| SRR7265386 | embryo | 3hN | 0.36 | MC |
| SRR7265387 | embryo | 3hN | 0.24 | MC |
| SRR7265391 | embryo | 12hN | 0.78 | MC |
| SRR7265392 | embryo | 12hN | 0.61 | MC |
| SRR7265393 | embryo | 12hN | 0.53 | MC |
| SRR7265396 | embryo | 24hA | 0.47 | MC |
| SRR7265398 | embryo | 24hN | 0.45 | MC |
| SRR2338867 | endosprem | control | 0.61 | MC |
| SRR2338869 | endosprem | high_temperature | 0.82 | MC |
| SRR976168 | flag_leaf | wild_type | 0.78 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.50 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.40 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.83 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.89 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.75 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.33 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 4.70 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 3.86 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 4.70 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 3.86 | MC |
| SRR1761530 | leaf | control | 4.70 | MC |
| SRR1761531 | leaf | control | 3.86 | MC |
| SRR504365 | leaf | wt | 2.94 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 3.52 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.70 | MC |
| SRR8611902 | leaf | Non-inoculated | 3.13 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.22 | MC |
| SRR5110429 | panicle | Dawn | 0.77 | MC |
| SRR5110431 | panicle | Dawn | 0.78 | MC |
| SRR5110432 | panicle | Dawn | 0.49 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 0.93 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 0.59 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.59 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.77 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.63 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.47 | MC |
| SRR5110440 | panicle | Dawn + 7h | 0.77 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.52 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.52 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.80 | MC |
| SRR5110445 | panicle | Dusk | 0.79 | MC |
| SRR5110446 | panicle | Dusk | 0.80 | MC |
| SRR5110447 | panicle | Dusk | 1.07 | MC |
| SRR5110448 | panicle | Dusk | 0.99 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.24 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.70 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.93 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.57 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.96 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.58 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.89 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.00 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.89 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.56 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.89 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.34 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.70 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.36 | MC |
| SRR1633185 | panicle | WT | 0.93 | MC |
| SRR5126149 | root | "mock,1_day" | 0.45 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.34 | MC |
| SRR1213694 | root | wt | 0.55 | MC |
| SRR4947480 | root | control | 4.38 | MC |
| SRR4947481 | root | control | 2.14 | MC |
| SRR4947483 | root | Al | 0.74 | MC |
| SRR4947484 | root | Al | 3.68 | MC |
| SRR4947485 | root | Al | 1.92 | MC |
| SRR4947488 | root | control | 4.14 | MC |
| SRR4947489 | root | control | 2.06 | MC |
| SRR4947492 | root | Al | 4.30 | MC |
| SRR4947493 | root | Al | 2.22 | MC |
| SRR4947497 | root | control | 2.33 | MC |
| SRR4947499 | root | Al | 0.79 | MC |
| SRR4947500 | root | Al | 2.97 | MC |
| SRR4947501 | root | Al | 1.61 | MC |
| SRR4947504 | root | control | 3.40 | MC |
| SRR4947505 | root | control | 2.64 | MC |
| SRR4947508 | root | Al | 2.88 | MC |
| SRR4947509 | root | Al | 0.91 | MC |
| SRR6502091 | root | 100 mM NaCl | 3.79 | MC |
| SRR6502092 | root | 100 mM NaCl | 3.97 | MC |
| SRR6502093 | root | 100 mM NaCl | 3.95 | MC |
| SRR6502103 | root | 100 mM NaCl | 4.31 | MC |
| SRR6502105 | root | 100 mM NaCl | 4.06 | MC |
| SRR1740434 | root_differentiation_zone | wt | 2.24 | MC |
| SRR1740435 | root_differentiation_zone | wt | 2.64 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.05 | MC |
| SRR1740431 | root_elongation_zone | wt | 3.05 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.54 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.38 | MC |
| SRR1740428 | root_meristematic_zone | wt | 2.21 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.82 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.19 | MC |
| SRR2154084 | seedling | wt | 0.34 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.77 | MC |
| SRR1944583 | seedling | no_treatment | 2.07 | MC |
| SRR358791 | seedling | wt | 3.40 | MC |
| SRR358792 | seedling | wt | 2.98 | MC |
| SRR358793 | seedling | wt | 1.50 | MC |
| SRR358794 | seedling | wt | 2.43 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 12.03 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.12 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.27 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.91 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.45 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 4.27 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 3.42 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 3.19 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.29 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 3.06 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.14 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.65 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.89 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.26 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.12 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.51 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.87 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.56 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.99 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.47 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.83 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 10.40 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 4.98 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 7.82 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 6.82 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 2.51 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 2.04 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.25 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.46 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 2.81 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 3.16 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.58 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.33 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 2.76 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 2.49 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 2.41 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.70 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.40 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 3.57 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 2.70 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 2.01 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 4.39 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 4.24 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 2.37 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.62 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.92 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.47 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.40 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.45 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.44 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.38 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.39 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.60 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.41 | MC |