| SRR358795 | callus | wt | 9.60 | MC |
| SRR358797 | callus | wt | 6.15 | MC |
| SRR358798 | callus | wt | 6.88 | MC |
| SRR7265404 | coleoptile | 2dN | 0.31 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.96 | MC |
| SRR7265376 | embryo | 1hA | 1.41 | MC |
| SRR7265377 | embryo | 1hA | 1.23 | MC |
| SRR7265378 | embryo | 1hA | 1.09 | MC |
| SRR7265379 | embryo | 1hN | 0.56 | MC |
| SRR7265380 | embryo | 1hN | 0.39 | MC |
| SRR7265381 | embryo | 1hN | 0.85 | MC |
| SRR7265385 | embryo | 3hN | 3.87 | MC |
| SRR7265386 | embryo | 3hN | 2.37 | MC |
| SRR7265387 | embryo | 3hN | 2.12 | MC |
| SRR7265388 | embryo | 12hA | 0.46 | MC |
| SRR7265391 | embryo | 12hN | 1.49 | MC |
| SRR7265392 | embryo | 12hN | 1.77 | MC |
| SRR7265393 | embryo | 12hN | 2.32 | MC |
| SRR7265398 | embryo | 24hN | 0.70 | MC |
| SRR7265399 | embryo | 24hN | 0.46 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.36 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.67 | MC |
| SRR8060836 | leaf | wild_type | 0.96 | MC |
| SRR8060837 | leaf | wild_type | 0.70 | MC |
| SRR8240824 | leaf | wild_type | 0.59 | MC |
| SRR8240825 | leaf | wild_type | 0.86 | MC |
| SRR8240826 | leaf | wild_type | 0.58 | MC |
| SRR8240818 | leaf | wild_type | 0.32 | MC |
| SRR8240819 | leaf | wild_type | 1.44 | MC |
| SRR8240820 | leaf | wild_type | 1.54 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.69 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.32 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.57 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.03 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.97 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.08 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 5.06 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.26 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.49 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.59 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.98 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.38 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.63 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.32 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.42 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.90 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.98 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.37 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.11 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.60 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.09 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.65 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.60 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.47 | MC |
| SRR504365 | leaf | wt | 0.32 | MC |
| SRR6417967 | leaf | H2O_control | 1.41 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.56 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.30 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.85 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.79 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.61 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.40 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 3.25 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.58 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.55 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.02 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.06 | MC |
| SRR1213693 | leaf | wt | 0.67 | MC |
| SRR6502088 | leaf | control | 1.54 | MC |
| SRR6502089 | leaf | control | 0.83 | MC |
| SRR6502090 | leaf | control | 1.49 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 3.19 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.75 | MC |
| SRR6502101 | leaf | control | 1.26 | MC |
| SRR6502102 | leaf | control | 0.73 | MC |
| SRR5856928 | leaf | control | 0.33 | MC |
| SRR5856930 | leaf | salt | 0.50 | MC |
| SRR5856931 | leaf | salt | 0.45 | MC |
| SRR5856932 | leaf | salt | 0.59 | MC |
| SRR5856934 | leaf | control | 0.31 | MC |
| SRR5856935 | leaf | control | 0.41 | MC |
| SRR5856936 | leaf | salt | 0.53 | MC |
| SRR5856937 | leaf | salt | 0.70 | MC |
| SRR5856938 | leaf | salt | 0.89 | MC |
| SRR6168973 | leaf | none (control) | 1.99 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.82 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.82 | MC |
| SRR1633182 | panicle | WT | 0.40 | MC |
| SRR1633185 | panicle | WT | 0.91 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.99 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.19 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.12 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.20 | MC |
| SRR5126147 | root | "mock,1_day" | 2.76 | MC |
| SRR5126148 | root | "mock,1_day" | 0.82 | MC |
| SRR5126149 | root | "mock,1_day" | 1.25 | MC |
| SRR5126155 | root | "mock,7_days" | 3.07 | MC |
| SRR5126157 | root | "mock,7_days" | 2.97 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.44 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 3.70 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 3.02 | MC |
| SRR5126167 | root | "mock,14_days" | 2.70 | MC |
| SRR5126169 | root | "mock,14_days" | 1.56 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.26 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.26 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.15 | MC |
| SRR1213694 | root | wt | 0.30 | MC |
| SRR1213695 | root | wt | 0.14 | MC |
| SRR4947480 | root | control | 1.10 | MC |
| SRR4947489 | root | control | 0.47 | MC |
| SRR4947504 | root | control | 0.62 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.60 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.91 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.46 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.46 | MC |
| SRR2154086 | seedling | wt | 0.39 | MC |
| SRR2154082 | seedling | wt | 0.41 | MC |
| SRR2154085 | seedling | wt | 0.37 | MC |
| SRR2154087 | seedling | wt | 1.25 | MC |
| SRR3098741 | seedling | wt | 2.02 | MC |
| SRR3098743 | seedling | wt | 0.60 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.86 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.42 | MC |
| SRR358792 | seedling | wt | 1.53 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.91 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 3.91 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.13 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.23 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.44 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.99 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.39 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 2.30 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 3.03 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.35 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.86 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.29 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.11 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.08 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.29 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.33 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.55 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.42 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.63 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.33 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.48 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.54 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.24 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.10 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 2.27 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.56 | MC |