| SRR4457254 | 2nd_leaf | DAH12 | 0.39 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.41 | MC |
| SRR5560728 | caryopsis | wild_type | 0.28 | MC |
| SRR5560729 | caryopsis | wild_type | 0.35 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.72 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.78 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.72 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.53 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.35 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.87 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.33 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.48 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.43 | MC |
| SRR8060835 | leaf | wild_type | 0.23 | MC |
| SRR8060836 | leaf | wild_type | 1.15 | MC |
| SRR8240824 | leaf | wild_type | 0.81 | MC |
| SRR8240820 | leaf | wild_type | 0.58 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.77 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.19 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.81 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.40 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.30 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.55 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.62 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.44 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.31 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.46 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.46 | MC |
| SRR1761531 | leaf | control | 0.46 | MC |
| SRR6417967 | leaf | H2O_control | 0.58 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.63 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.59 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.47 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.68 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.57 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.23 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.29 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.64 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.62 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.58 | MC |
| SRR5856937 | leaf | salt | 0.30 | MC |
| SRR6168973 | leaf | none (control) | 0.61 | MC |
| SRR6168974 | leaf | none (control) | 0.66 | MC |
| SRR6168975 | leaf | none (control) | 2.19 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 2.56 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.80 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 2.27 | MC |
| SRR6168981 | leaf | none (control) | 0.34 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.48 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.32 | MC |
| SRR1633182 | panicle | WT | 0.68 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.22 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.34 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.97 | MC |
| SRR5126147 | root | "mock,1_day" | 2.18 | MC |
| SRR5126148 | root | "mock,1_day" | 3.54 | MC |
| SRR5126149 | root | "mock,1_day" | 0.41 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.66 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.53 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.71 | MC |
| SRR5126153 | root | "mock,7_days" | 0.97 | MC |
| SRR5126155 | root | "mock,7_days" | 0.82 | MC |
| SRR5126157 | root | "mock,7_days" | 0.46 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.67 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.54 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.84 | MC |
| SRR5126165 | root | "mock,14_days" | 0.33 | MC |
| SRR5126167 | root | "mock,14_days" | 0.58 | MC |
| SRR5126169 | root | "mock,14_days" | 0.39 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.78 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.61 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.50 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.29 | MC |
| SRR1213695 | root | wt | 0.13 | MC |
| SRR4947485 | root | Al | 0.54 | MC |
| SRR4947493 | root | Al | 0.55 | MC |
| SRR4947497 | root | control | 0.73 | MC |
| SRR4947501 | root | Al | 0.54 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.04 | MC |
| SRR6502095 | root | control | 0.95 | MC |
| SRR6502106 | root | control | 0.43 | MC |
| SRR1740435 | root_differentiation_zone | wt | 2.05 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.71 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.86 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.89 | MC |
| SRR6441554 | seedling | wild_type | 0.75 | MC |
| SRR3098741 | seedling | wt | 0.22 | MC |
| SRR3098742 | seedling | wt | 0.37 | MC |
| SRR3098743 | seedling | wt | 0.27 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.13 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.17 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 12.00 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.44 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.70 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.90 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.29 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.28 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.65 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.74 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.38 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.43 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.67 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.37 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.47 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.63 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.26 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.26 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.26 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.69 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.19 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.29 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.27 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.30 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.70 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.39 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.42 | MC |