| SRR6320498 | carpel | wt | 1.16 | MC |
| SRR5560729 | caryopsis | wild_type | 1.78 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.81 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 3.20 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.20 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 4.56 | MC |
| SRR504365 | leaf | wt | 0.53 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.27 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.03 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.24 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.95 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.25 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.77 | MC |
| SRR5856927 | leaf | control | 0.68 | MC |
| SRR5856928 | leaf | control | 1.85 | MC |
| SRR5856929 | leaf | control | 1.24 | MC |
| SRR5856934 | leaf | control | 2.18 | MC |
| SRR5856935 | leaf | control | 1.26 | MC |
| SRR5856936 | leaf | salt | 1.70 | MC |
| SRR5856938 | leaf | salt | 1.90 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.00 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 2.16 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.05 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.79 | MC |
| SRR5110445 | panicle | Dusk | 1.02 | MC |
| SRR5110446 | panicle | Dusk | 0.91 | MC |
| SRR5110447 | panicle | Dusk | 0.93 | MC |
| SRR5110448 | panicle | Dusk | 0.86 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.37 | MC |
| SRR5126148 | root | "mock,1_day" | 3.26 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.45 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.08 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.39 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.88 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.88 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 3.53 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.85 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 4.10 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.53 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.61 | MC |
| SRR1213694 | root | wt | 0.89 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.71 | MC |
| SRR6502095 | root | control | 0.47 | MC |
| SRR6502096 | root | control | 1.11 | MC |
| SRR2154082 | seedling | wt | 0.40 | MC |
| SRR2154085 | seedling | wt | 0.64 | MC |
| SRR3098742 | seedling | wt | 0.19 | MC |
| SRR3098743 | seedling | wt | 0.34 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.43 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.38 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.33 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.29 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.47 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.46 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.07 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.00 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.82 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.35 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.84 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.37 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.53 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.49 | MC |