| SRR4457249 | 2nd_leaf | DAH4 | 0.61 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.51 | MC |
| SRR6320498 | carpel | wt | 2.22 | MC |
| SRR5560728 | caryopsis | wild_type | 5.10 | MC |
| SRR5560729 | caryopsis | wild_type | 3.29 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.54 | MC |
| SRR7265401 | coleoptile | 2dA | 0.49 | MC |
| SRR7265404 | coleoptile | 2dN | 0.72 | MC |
| SRR7265405 | coleoptile | 2dN | 0.30 | MC |
| SRR7265406 | coleoptile | 3dA | 0.31 | MC |
| SRR7265409 | coleoptile | 3dN | 0.89 | MC |
| SRR7265410 | coleoptile | 3dN | 0.91 | MC |
| SRR7265411 | coleoptile | 3dN | 1.40 | MC |
| SRR7265412 | coleoptile | 4dA | 0.67 | MC |
| SRR7265415 | coleoptile | 4dN | 3.86 | MC |
| SRR7265416 | coleoptile | 4dN | 2.06 | MC |
| SRR7265417 | coleoptile | 4dN | 4.03 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.86 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.14 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.71 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 2.66 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.15 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.82 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.69 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.73 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.68 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.81 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.34 | MC |
| SRR7265398 | embryo | 24hN | 0.76 | MC |
| SRR2338868 | endosprem | high_temperature | 1.48 | MC |
| SRR976168 | flag_leaf | wild_type | 0.56 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.26 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.34 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.39 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.39 | MC |
| SRR8240824 | leaf | wild_type | 1.24 | MC |
| SRR8240825 | leaf | wild_type | 1.91 | MC |
| SRR8240818 | leaf | wild_type | 0.61 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.81 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.40 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.45 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.16 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.30 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.50 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.31 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.64 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.64 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.60 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.20 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.24 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.61 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.68 | MC |
| SRR1213692 | leaf | wt | 0.65 | MC |
| SRR6502088 | leaf | control | 0.66 | MC |
| SRR5856927 | leaf | control | 1.37 | MC |
| SRR5856928 | leaf | control | 1.24 | MC |
| SRR5856929 | leaf | control | 1.47 | MC |
| SRR5856930 | leaf | salt | 1.31 | MC |
| SRR5856931 | leaf | salt | 1.06 | MC |
| SRR5856932 | leaf | salt | 1.47 | MC |
| SRR5856933 | leaf | control | 1.56 | MC |
| SRR5856934 | leaf | control | 1.82 | MC |
| SRR5856935 | leaf | control | 1.89 | MC |
| SRR5856936 | leaf | salt | 1.58 | MC |
| SRR5856937 | leaf | salt | 1.04 | MC |
| SRR5856938 | leaf | salt | 1.21 | MC |
| SRR5110429 | panicle | Dawn | 3.71 | MC |
| SRR5110430 | panicle | Dawn | 4.72 | MC |
| SRR4947496 | root | control | 0.66 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 2.46 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 3.45 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 3.12 | MC |
| SRR5110446 | panicle | Dusk | 1.40 | MC |
| SRR5110447 | panicle | Dusk | 3.80 | MC |
| SRR5110448 | panicle | Dusk | 3.36 | MC |
| SRR5110452 | panicle | Dawn + 14h | 3.37 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 2.64 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 3.42 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 3.12 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.93 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.56 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.33 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.90 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.99 | MC |
| SRR5126147 | root | "mock,1_day" | 2.00 | MC |
| SRR5126148 | root | "mock,1_day" | 0.98 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.60 | MC |
| SRR5126153 | root | "mock,7_days" | 2.58 | MC |
| SRR5126155 | root | "mock,7_days" | 1.69 | MC |
| SRR5126157 | root | "mock,7_days" | 0.83 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.26 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.26 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 3.42 | MC |
| SRR5126165 | root | "mock,14_days" | 1.54 | MC |
| SRR5126167 | root | "mock,14_days" | 2.08 | MC |
| SRR5126169 | root | "mock,14_days" | 0.65 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.70 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.35 | MC |
| SRR1213694 | root | wt | 0.27 | MC |
| SRR1213695 | root | wt | 0.20 | MC |
| SRR4947479 | root | control | 0.91 | MC |
| SRR4947480 | root | control | 1.25 | MC |
| SRR4947482 | root | Al | 1.34 | MC |
| SRR4947483 | root | Al | 0.65 | MC |
| SRR4947484 | root | Al | 1.13 | MC |
| SRR4947485 | root | Al | 1.16 | MC |
| SRR4947487 | root | control | 1.04 | MC |
| SRR4947488 | root | control | 0.47 | MC |
| SRR4947489 | root | control | 0.92 | MC |
| SRR4947490 | root | Al | 1.24 | MC |
| SRR4947491 | root | Al | 1.05 | MC |
| SRR4947494 | root | control | 1.84 | MC |
| SRR4947497 | root | control | 1.38 | MC |
| SRR4947498 | root | Al | 1.14 | MC |
| SRR4947499 | root | Al | 1.61 | MC |
| SRR4947500 | root | Al | 1.39 | MC |
| SRR4947501 | root | Al | 3.32 | MC |
| SRR4947502 | root | control | 2.26 | MC |
| SRR4947503 | root | control | 1.25 | MC |
| SRR4947504 | root | control | 1.29 | MC |
| SRR4947505 | root | control | 1.89 | MC |
| SRR4947507 | root | Al | 4.09 | MC |
| SRR4947508 | root | Al | 0.99 | MC |
| SRR4947509 | root | Al | 1.74 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.66 | MC |
| SRR6502108 | root | control | 0.97 | MC |
| SRR2154083 | seedling | wt | 0.78 | MC |
| SRR2154084 | seedling | wt | 1.69 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.27 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.09 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.55 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.86 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.90 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.93 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.69 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.41 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.01 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.84 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.05 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.53 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.41 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.65 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 2.24 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 3.33 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.50 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 2.00 | MC |