| SRR6320473 | carpel | wt | 1.16 | MC |
| SRR6320498 | carpel | wt | 2.06 | MC |
| SRR5560727 | caryopsis | wild_type | 0.72 | MC |
| SRR5560728 | caryopsis | wild_type | 0.67 | MC |
| SRR5560729 | caryopsis | wild_type | 0.62 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.39 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.51 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.53 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.12 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.04 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.75 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.18 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 2.01 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.46 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.39 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.84 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.10 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.01 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.83 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.57 | MC |
| SRR7265382 | embryo | 3hA | 0.48 | MC |
| SRR7265384 | embryo | 3hA | 0.32 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.54 | MC |
| SRR1213691 | flower | wt | 1.40 | MC |
| SRR8060835 | leaf | wild_type | 0.46 | MC |
| SRR8060836 | leaf | wild_type | 0.45 | MC |
| SRR8060837 | leaf | wild_type | 0.49 | MC |
| SRR8240824 | leaf | wild_type | 0.41 | MC |
| SRR8240825 | leaf | wild_type | 0.30 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.95 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.22 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.76 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.84 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.21 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.23 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.74 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.74 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.42 | MC |
| SRR1761528 | leaf | drought | 0.74 | MC |
| SRR504365 | leaf | wt | 0.24 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.23 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.25 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.65 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.45 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.24 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.47 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.42 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.37 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.43 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.21 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.63 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.14 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.89 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.15 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 4.01 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.44 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.41 | MC |
| SRR1213693 | leaf | wt | 0.30 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.09 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.42 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.80 | MC |
| SRR6502088 | leaf | control | 0.52 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.03 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.39 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.39 | MC |
| SRR6502100 | leaf | control | 0.38 | MC |
| SRR6502101 | leaf | control | 0.49 | MC |
| SRR6502102 | leaf | control | 0.49 | MC |
| SRR5856929 | leaf | control | 0.18 | MC |
| SRR5856933 | leaf | control | 0.20 | MC |
| SRR5856934 | leaf | control | 0.31 | MC |
| SRR5856935 | leaf | control | 0.21 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.70 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 3.24 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 1.27 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 1.30 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.32 | MC |
| SRR6168973 | leaf | none (control) | 3.86 | MC |
| SRR6168974 | leaf | none (control) | 2.02 | MC |
| SRR6168975 | leaf | none (control) | 1.55 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 3.61 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 2.30 | MC |
| SRR6168980 | leaf | none (control) | 0.54 | MC |
| SRR6168981 | leaf | none (control) | 2.42 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 2.38 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 3.16 | MC |
| SRR8582891 | panicle | PM | 0.82 | MC |
| SRR8582893 | panicle | PM | 0.82 | MC |
| SRR5110431 | panicle | Dawn | 0.41 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.39 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.46 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.07 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.80 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.52 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.99 | MC |
| SRR5110445 | panicle | Dusk | 1.16 | MC |
| SRR5110446 | panicle | Dusk | 0.70 | MC |
| SRR5110447 | panicle | Dusk | 0.56 | MC |
| SRR5110448 | panicle | Dusk | 0.62 | MC |
| SRR5110449 | panicle | Dawn + 14h | 0.67 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.65 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.41 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.58 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.28 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.54 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.40 | MC |
| SRR1633185 | panicle | WT | 0.32 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.83 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.92 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.44 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.61 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.23 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.03 | MC |
| SRR5126153 | root | "mock,7_days" | 0.44 | MC |
| SRR5126155 | root | "mock,7_days" | 0.44 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.88 | MC |
| SRR5126165 | root | "mock,14_days" | 0.37 | MC |
| SRR5126169 | root | "mock,14_days" | 0.46 | MC |
| SRR1213694 | root | wt | 0.46 | MC |
| SRR1213695 | root | wt | 0.33 | MC |
| SRR4947478 | root | control | 0.71 | MC |
| SRR4947479 | root | control | 0.60 | MC |
| SRR4947482 | root | Al | 0.49 | MC |
| SRR4947483 | root | Al | 0.74 | MC |
| SRR4947487 | root | control | 0.55 | MC |
| SRR4947490 | root | Al | 0.77 | MC |
| SRR4947491 | root | Al | 0.65 | MC |
| SRR4947494 | root | control | 0.58 | MC |
| SRR4947502 | root | control | 0.57 | MC |
| SRR4947503 | root | control | 0.59 | MC |
| SRR4947506 | root | Al | 0.89 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.49 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.46 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.44 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.45 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.54 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.47 | MC |
| SRR6441554 | seedling | wild_type | 1.13 | MC |
| SRR6441555 | seedling | wild_type | 0.82 | MC |
| SRR2154086 | seedling | wt | 2.13 | MC |
| SRR2154082 | seedling | wt | 1.38 | MC |
| SRR2154083 | seedling | wt | 1.50 | MC |
| SRR2154084 | seedling | wt | 1.89 | MC |
| SRR2154085 | seedling | wt | 1.03 | MC |
| SRR2154087 | seedling | wt | 1.03 | MC |
| SRR3098741 | seedling | wt | 1.08 | MC |
| SRR3098742 | seedling | wt | 0.98 | MC |
| SRR3098743 | seedling | wt | 0.75 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.90 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.61 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 1.43 | MC |
| SRR1944583 | seedling | no_treatment | 0.70 | MC |
| SRR358791 | seedling | wt | 0.95 | MC |
| SRR358792 | seedling | wt | 0.80 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.11 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 3.87 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.17 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.16 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.75 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.49 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.74 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.64 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.13 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.75 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.27 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.28 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.02 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.20 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.49 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.53 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.79 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.56 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.59 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.58 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.50 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.73 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.94 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.04 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.48 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.49 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.45 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 2.05 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.67 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.68 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.77 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 2.01 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.36 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.06 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.17 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.36 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.40 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.43 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.14 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.17 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.99 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.47 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.85 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.74 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.59 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.89 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.39 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.60 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.65 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.62 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.60 | MC |