| SRR4457250 | 2nd_leaf | DAH4 | 0.56 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.34 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 1.53 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.49 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.92 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 2.08 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.67 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.70 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.71 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.96 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.39 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.20 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.41 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.93 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 0.77 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.38 | MC |
| SRR3745125 | anther | wt | 5.94 | MC |
| SRR6320498 | carpel | wt | 1.67 | MC |
| SRR5560727 | caryopsis | wild_type | 0.50 | MC |
| SRR5560728 | caryopsis | wild_type | 0.31 | MC |
| SRR5560729 | caryopsis | wild_type | 0.55 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.51 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.42 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.38 | MC |
| SRR7265400 | coleoptile | 2dA | 0.28 | MC |
| SRR7265406 | coleoptile | 3dA | 0.47 | MC |
| SRR7265407 | coleoptile | 3dA | 0.38 | MC |
| SRR7265408 | coleoptile | 3dA | 0.34 | MC |
| SRR7265409 | coleoptile | 3dN | 0.77 | MC |
| SRR7265410 | coleoptile | 3dN | 0.34 | MC |
| SRR7265411 | coleoptile | 3dN | 0.61 | MC |
| SRR7265414 | coleoptile | 4dA | 0.83 | MC |
| SRR7265415 | coleoptile | 4dN | 1.13 | MC |
| SRR7265416 | coleoptile | 4dN | 0.65 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.57 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.11 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.49 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.34 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.65 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.82 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.36 | MC |
| SRR7265376 | embryo | 1hA | 0.74 | MC |
| SRR7265377 | embryo | 1hA | 0.72 | MC |
| SRR7265378 | embryo | 1hA | 0.82 | MC |
| SRR7265379 | embryo | 1hN | 0.92 | MC |
| SRR7265381 | embryo | 1hN | 0.55 | MC |
| SRR7265383 | embryo | 3hA | 1.48 | MC |
| SRR7265384 | embryo | 3hA | 0.81 | MC |
| SRR7265385 | embryo | 3hN | 1.05 | MC |
| SRR7265386 | embryo | 3hN | 0.43 | MC |
| SRR7265387 | embryo | 3hN | 0.70 | MC |
| SRR7265397 | embryo | 24hN | 0.50 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.64 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.29 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.40 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.22 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.53 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.50 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.24 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.27 | MC |
| SRR4457239 | flag_leaf | DAH20 | 2.38 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.10 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.97 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.60 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.81 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.50 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.05 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.69 | MC |
| SRR1213691 | flower | wt | 0.88 | MC |
| SRR8060835 | leaf | wild_type | 1.11 | MC |
| SRR8060836 | leaf | wild_type | 1.80 | MC |
| SRR8060837 | leaf | wild_type | 1.62 | MC |
| SRR8240826 | leaf | wild_type | 0.41 | MC |
| SRR8240818 | leaf | wild_type | 0.65 | MC |
| SRR8240820 | leaf | wild_type | 0.84 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.44 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.73 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.75 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.39 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.97 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.43 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.78 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.98 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.85 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.07 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.86 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 2.57 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 2.68 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 4.60 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.94 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.58 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.91 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.41 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.40 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.67 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.80 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.70 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.83 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.58 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.58 | MC |
| SRR1761529 | leaf | drought | 0.58 | MC |
| SRR504365 | leaf | wt | 0.24 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.07 | MC |
| SRR6417969 | leaf | H2O_control | 0.46 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.39 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.34 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.30 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.27 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.42 | MC |
| SRR1213692 | leaf | wt | 0.28 | MC |
| SRR1213693 | leaf | wt | 0.35 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.08 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.95 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 2.85 | MC |
| SRR6502088 | leaf | control | 2.12 | MC |
| SRR6502089 | leaf | control | 2.06 | MC |
| SRR6502090 | leaf | control | 2.55 | MC |
| SRR5856927 | leaf | control | 0.20 | MC |
| SRR5856928 | leaf | control | 0.46 | MC |
| SRR5856929 | leaf | control | 0.24 | MC |
| SRR5856930 | leaf | salt | 0.19 | MC |
| SRR5856935 | leaf | control | 0.90 | MC |
| SRR5856937 | leaf | salt | 0.47 | MC |
| SRR5856938 | leaf | salt | 0.19 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 3.55 | MC |
| SRR6168973 | leaf | none (control) | 0.91 | MC |
| SRR6168974 | leaf | none (control) | 0.48 | MC |
| SRR6168975 | leaf | none (control) | 0.54 | MC |
| SRR6168981 | leaf | none (control) | 0.22 | MC |
| SRR5110430 | panicle | Dawn | 1.12 | MC |
| SRR5110431 | panicle | Dawn | 1.92 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.93 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.64 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.96 | MC |
| SRR5110439 | panicle | Dawn + 7h | 3.62 | MC |
| SRR5110440 | panicle | Dawn + 7h | 2.69 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 2.58 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 2.19 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.61 | MC |
| SRR5110447 | panicle | Dusk | 0.54 | MC |
| SRR5110448 | panicle | Dusk | 1.55 | MC |
| SRR5110449 | panicle | Dawn + 14h | 2.97 | MC |
| SRR5110450 | panicle | Dawn + 14h | 2.34 | MC |
| SRR5110451 | panicle | Dawn + 14h | 2.70 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.52 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.19 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.03 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.57 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.18 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.26 | MC |
| SRR5126147 | root | "mock,1_day" | 0.75 | MC |
| SRR5126148 | root | "mock,1_day" | 1.30 | MC |
| SRR5126149 | root | "mock,1_day" | 1.26 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.86 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.56 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.78 | MC |
| SRR5126153 | root | "mock,7_days" | 0.99 | MC |
| SRR5126155 | root | "mock,7_days" | 0.85 | MC |
| SRR5126157 | root | "mock,7_days" | 0.84 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.44 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.54 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.73 | MC |
| SRR5126165 | root | "mock,14_days" | 0.70 | MC |
| SRR5126167 | root | "mock,14_days" | 1.18 | MC |
| SRR5126169 | root | "mock,14_days" | 1.31 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.45 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.38 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.45 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.46 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.35 | MC |
| SRR1213694 | root | wt | 0.62 | MC |
| SRR1213695 | root | wt | 0.27 | MC |
| SRR4947482 | root | Al | 0.59 | MC |
| SRR4947493 | root | Al | 0.61 | MC |
| SRR4947504 | root | control | 1.31 | MC |
| SRR4947509 | root | Al | 0.66 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.02 | MC |
| SRR6502094 | root | control | 0.66 | MC |
| SRR6502096 | root | control | 0.75 | MC |
| SRR2154083 | seedling | wt | 0.35 | MC |
| SRR2154084 | seedling | wt | 0.57 | MC |
| SRR2154085 | seedling | wt | 2.95 | MC |
| SRR3098742 | seedling | wt | 0.17 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.60 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.25 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.12 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 12.29 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.36 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.18 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.98 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.85 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.28 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.20 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.41 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.32 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.64 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.03 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 3.55 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 3.31 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.97 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 2.10 | MC |